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  5. GSVIVT01021218001

GSVIVT01021218001


Description : RNA biosynthesis.transcriptional activation.Trihelix transcription factor


Gene families : OG0000091 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000091_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021218001
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00054880 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g022822 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g02121 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g11436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16349 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g29898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g30186 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g30640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18098 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g57274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30323.t1 Aspi01Gene30323 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36870.t1 Aspi01Gene36870 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36885.t1 Aspi01Gene36885 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene36907.t1 Aspi01Gene36907 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65675.t1 Aspi01Gene65675 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65680.t1 Aspi01Gene65680 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene68690.t1 Aspi01Gene68690 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0083.g038858 No alias not classified & original description: CDS=1-924 0.02 OrthoFinder output from all 47 species
Cba_g34746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g33823 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29521 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g31299 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g52940.1 LOC_Os03g52940 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g25446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28812 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426045g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_353082g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g15400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g14967 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22861 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g21541 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g24562 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g24634 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g41073 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61924 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g079550.2.1 Solyc01g079550 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g22642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e026206_P001 Zm00001e026206 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025322 PADRE_dom 9 127
No external refs found!