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  5. GSVIVT01021374001

GSVIVT01021374001


Description : Pentatricopeptide repeat-containing protein At5g46460, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021374001

Target Alias Description ECC score Gene Family Method Actions
Ala_g16840 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g16990 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g17011 CRR22 not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ala_g17018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17608 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g24748 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31186 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03141 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g04425 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g06874 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07386 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene27322.t1 Aspi01Gene27322 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34523.t1 Aspi01Gene34523 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene43974.t1 REME1, Aspi01Gene43974 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene52145.t1 CRR22, Aspi01Gene52145 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene58744.t1 EMB2758, Aspi01Gene58744 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.21G004000.1 Ceric.21G004000 not classified & original description: pacid=50604228... 0.11 OrthoFinder output from all 47 species
Dac_g32949 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.01 OrthoFinder output from all 47 species
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.01 OrthoFinder output from all 47 species
LOC_Os03g60690.1 LPA66, LOC_Os03g60690 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Len_g19011 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g25978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g31186 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g31656 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g15801 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g13516 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g110010.3.1 Solyc01g110010 Pentatricopeptide repeat-containing protein At1g74600,... 0.03 OrthoFinder output from all 47 species
Solyc02g014360.3.1 LOI1, MEF11,... RNA editing factor (MEF11) 0.02 OrthoFinder output from all 47 species
Solyc02g082160.2.1 CRR22, Solyc02g082160 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
Solyc05g012630.2.1 Solyc05g012630 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc08g023640.1.1 Solyc08g023640 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.02 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.04 OrthoFinder output from all 47 species
Solyc12g042400.1.1 SLO1, Solyc12g042400 Pentatricopeptide repeat-containing protein At2g29760,... 0.09 OrthoFinder output from all 47 species
Spa_g21106 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g04672 SLO1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g19923 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 526 649
IPR002885 Pentatricopeptide_repeat 428 452
IPR002885 Pentatricopeptide_repeat 89 115
IPR002885 Pentatricopeptide_repeat 118 146
IPR002885 Pentatricopeptide_repeat 252 299
IPR002885 Pentatricopeptide_repeat 55 88
IPR002885 Pentatricopeptide_repeat 352 400
IPR002885 Pentatricopeptide_repeat 149 199
No external refs found!