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  5. GSVIVT01021576001

GSVIVT01021576001 (BRCA1, ATBRCA1)


Aliases : BRCA1, ATBRCA1

Description : DNA damage response.BRCA1–BARD1 DNA-damage response heterodimer.BRCA1|BARD1 component


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01021576001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00113430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g18485... 0.19 OrthoFinder output from all 47 species
AT3G61170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT3G62890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G37380 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G52630 MEF1 mitochondrial RNAediting factor 1 0.01 OrthoFinder output from all 47 species
AT5G61400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g003776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g006574 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034364 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069053 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g076457 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05010 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g23810 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g26997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16183 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene10966.t1 Aspi01Gene10966 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene13090.t2 Aspi01Gene13090 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34749.t1 Aspi01Gene34749 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene42676.t1 Aspi01Gene42676 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene49181.t1 Aspi01Gene49181 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene54730.t1 Aspi01Gene54730 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t1 Aspi01Gene67429 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007681 No alias not classified & original description: CDS=1-3132 0.02 OrthoFinder output from all 47 species
Azfi_s0010.g012382 OTP84 not classified & original description: CDS=1-2100 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012554 No alias not classified & original description: CDS=1-2283 0.01 OrthoFinder output from all 47 species
Azfi_s0015.g013783 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-1998 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g029802 No alias not classified & original description: CDS=1-2208 0.03 OrthoFinder output from all 47 species
Azfi_s0054.g033567 EMB2758 not classified & original description: CDS=1-2352 0.03 OrthoFinder output from all 47 species
Azfi_s0068.g036422 No alias not classified & original description: CDS=1-2670 0.02 OrthoFinder output from all 47 species
Azfi_s0069.g036580 No alias not classified & original description: CDS=1-1665 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037480 OTP82 not classified & original description: CDS=1-1485 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038406 OTP86 not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Azfi_s0114.g046172 No alias not classified & original description: CDS=1-2679 0.02 OrthoFinder output from all 47 species
Azfi_s0326.g065222 No alias not classified & original description: CDS=1-2895 0.02 OrthoFinder output from all 47 species
Azfi_s0503.g073904 No alias not classified & original description: CDS=1-2580 0.03 OrthoFinder output from all 47 species
Azfi_s0579.g078277 No alias not classified & original description: CDS=1-1956 0.02 OrthoFinder output from all 47 species
Azfi_s3922.g117339 No alias not classified & original description: CDS=1-831 0.01 OrthoFinder output from all 47 species
Cba_g05154 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05301 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06120 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07466 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G033100.1 Ceric.02G033100 not classified & original description: pacid=50586102... 0.03 OrthoFinder output from all 47 species
Ceric.13G010900.1 Ceric.13G010900 not classified & original description: pacid=50636623... 0.05 OrthoFinder output from all 47 species
Ceric.14G067900.1 CRR22, Ceric.14G067900 not classified & original description: pacid=50634625... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020553.200 No alias No description available 0.01 OrthoFinder output from all 47 species
Cre12.g483700 OSB4 Cell cycle.organelle machineries.DNA... 0.01 OrthoFinder output from all 47 species
Dac_g09646 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07619 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g03413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03570 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g33302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35930 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g06422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g14854 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g41118 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41405 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15317 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001330 No alias not classified & original description: CDS=1-3081 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003604 No alias not classified & original description: CDS=1-2277 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004138 No alias not classified & original description: CDS=1-2646 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0015.g006567 No alias not classified & original description: CDS=1-2706 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007440 No alias not classified & original description: CDS=1-1395 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007686 No alias not classified & original description: CDS=1-1089 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009076 No alias not classified & original description: CDS=1-1737 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012770 No alias not classified & original description: CDS=1-1605 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013097 No alias not classified & original description: CDS=1-2613 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013156 No alias not classified & original description: CDS=1-2970 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013956 No alias not classified & original description: CDS=1-2181 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015039 No alias not classified & original description: CDS=1-1803 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015239 No alias not classified & original description: CDS=1-2529 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015411 No alias not classified & original description: CDS=1-3726 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g015944 CRR22 not classified & original description: CDS=122-4345 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017260 No alias not classified & original description: CDS=1-1968 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019336 No alias not classified & original description: CDS=1-1245 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019756 No alias not classified & original description: CDS=1-2544 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022201 No alias not classified & original description: CDS=265-2808 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0143.g022909 No alias not classified & original description: CDS=1-2484 0.1 OrthoFinder output from all 47 species
Sacu_v1.1_s0147.g023182 No alias not classified & original description: CDS=1-4812 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0153.g023499 No alias not classified & original description: CDS=1-1593 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023710 No alias not classified & original description: CDS=112-2235 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0196.g025493 No alias not classified & original description: CDS=1-2751 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025550 No alias not classified & original description: CDS=1-2784 0.09 OrthoFinder output from all 47 species
Sacu_v1.1_s0200.g025598 No alias not classified & original description: CDS=1-3840 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0217.g026076 CRR2 not classified & original description: CDS=1-1617 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026116 No alias not classified & original description: CDS=1-2901 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0275.g027065 No alias not classified & original description: CDS=1-2244 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0345.g027287 No alias not classified & original description: CDS=1-2001 0.04 OrthoFinder output from all 47 species
Sam_g06304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25056 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27517 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo108652 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Solyc04g064750.2.1 Solyc04g064750 RNA editing factor (MEF12). serine carboxypeptidase 0.04 OrthoFinder output from all 47 species
Tin_g04582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17800 EMB2261 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 334 453
IPR002885 Pentatricopeptide_repeat 160 207
IPR002885 Pentatricopeptide_repeat 60 107
IPR001357 BRCT_dom 1192 1263
No external refs found!