GSVIVT01023149001 (ARF1)

Aliases : ARF1

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01023149001

Target	Alias	Description	ECC score	Gene Family Method
Adi_g001040	ARF11	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088063	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g088539	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g089250	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g103007	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g110090	ARF1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g02591	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07961	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g04069	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.28G004000.1	HSS, ARF1-BP,...	ARF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020904.93	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dcu_g06468	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08602	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08691	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016266001	ARF16	Auxin response factor 18 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
GSVIVT01025198001	ARF10	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
LOC_Os01g48060.1	ARF3, ETT, LOC_Os01g48060	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os05g43920.1	ARF3, ETT, LOC_Os05g43920	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
LOC_Os12g29520.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
LOC_Os12g41950.1	ARF6, LOC_Os12g41950	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Lfl_g07404	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18657	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10431695g0010	ARF19, IAA22, ARF11	Auxin response factor 19 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Ore_g42999	ARF6	ARF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g41869	ARF17	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g25926	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000212	ARF4	not classified & original description: CDS=1-1212	0.02	OrthoFinder output from all 47 species
Smo424114	ARF6	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Solyc05g056040.3.1	ARF11, Solyc05g056040	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e006640_P002	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e028396_P001	HSS, ARF1-BP,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species
Zm00001e039552_P004	HSS, ARF1-BP,...	transcription factor (ARF)	0.05	OrthoFinder output from all 47 species
Zm00001e041866_P001	MP, IAA24, ARF5,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	128	228
IPR010525	ARF_dom	254	337
IPR033389	AUX/IAA_dom	550	643

External Links

No external refs found!

GSVIVT01023149001 (ARF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation