GSVIVT01024985001 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : U-box domain-containing protein 13 OS=Arabidopsis thaliana

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01024985001
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00171260	PUB14, ATPUB14,...	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.04	OrthoFinder output from all 47 species
AT3G07360	PUB9, ATPUB9	plant U-box 9	0.04	OrthoFinder output from all 47 species
AT5G42340	PUB15	Plant U-Box 15	0.03	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g017517	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g03880	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g05890	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g02170	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g17547	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05074	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.03	OrthoFinder output from all 47 species
Cba_g31838	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.35G034600.1	PUB18, ATPUB18,...	not classified & original description: pacid=50581001...	0.04	OrthoFinder output from all 47 species
Gb_12875	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Gb_21414	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
LOC_Os01g72600.1	LOC_Os01g72600	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os02g13960.1	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.07	OrthoFinder output from all 47 species
MA_375372g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_85119g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Msp_g01498	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g03488	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19747	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Solyc11g008390.2.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e014566_P002	PUB9, ATPUB9,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Zm00001e024908_P001	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Zm00001e035415_P001	Zm00001e035415	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	257	327

External Links

No external refs found!

GSVIVT01024985001 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation