1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01025031001

GSVIVT01025031001 (ATMBD7, MBD7)


Aliases : ATMBD7, MBD7

Description : Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.MBD7 ROS1-recruitment complex.MBD7 component


Gene families : OG0000559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000559_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025031001

Target Alias Description ECC score Gene Family Method Actions
AT5G59800 ATMBD7, MBD7 methyl-CPG-binding domain 7 0.02 OrthoFinder output from all 47 species
Adi_g008918 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g018652 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g081598 No alias methylation reader *(MBD5-6) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene50817.t1 MBD05, MBD5,... methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55862.t1 MBD05, MBD5,... methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene62285.t1 ATMBD6, MBD6,... methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30007 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.32G024300.1 Ceric.32G024300 methylation reader *(MBD5-6) & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g04443 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25548 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
MA_411073g0010 MBD05, MBD5, ATMBD5 methylation reader (MBD5-6) 0.01 OrthoFinder output from all 47 species
Msp_g13225 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29243 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g01254 MBD05, MBD5, ATMBD5 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g47240 ATMBD6, MBD6 methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16545 No alias methylation reader *(MBD5-6) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02100 No alias methylation reader *(MBD5-6) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 98 138
IPR001739 Methyl_CpG_DNA-bd 11 60
No external refs found!