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  5. GSVIVT01025357001

GSVIVT01025357001


Description : DNA damage response.DNA repair mechanisms.homologous recombination repair (HR).Smc5-Smc6 complex.NSE4 Kleisin-like bridging component


Gene families : OG0002126 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002126_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025357001
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT1G51130 No alias Nse4, component of Smc5/6 DNA repair complex 0.03 OrthoFinder output from all 47 species
Als_g46449 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.03 OrthoFinder output from all 47 species
Aop_g60741 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.11 OrthoFinder output from all 47 species
Aspi01Gene07665.t1 Aspi01Gene07665 Kleisin-like bridging component *(NSE4) of homologous... 0.04 OrthoFinder output from all 47 species
Ceric.01G103900.1 Ceric.01G103900 Kleisin-like bridging component *(NSE4) of homologous... 0.1 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000217.26 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 OrthoFinder output from all 47 species
Cre04.g215650 No alias DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Len_g11156 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.05 OrthoFinder output from all 47 species
MA_10431826g0010 No alias Kleisin-like bridging component NSE4 of homologous... 0.14 OrthoFinder output from all 47 species
Mp7g13530.1 No alias Kleisin-like bridging component NSE4 of homologous... 0.16 OrthoFinder output from all 47 species
Ore_g24189 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008890 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.03 OrthoFinder output from all 47 species
Sam_g48728 No alias Kleisin-like bridging component *(NSE4) of homologous... 0.03 OrthoFinder output from all 47 species
Solyc10g078730.2.1 Solyc10g078730 Kleisin-like bridging component NSE4 of homologous... 0.09 OrthoFinder output from all 47 species
Solyc12g041890.2.1 Solyc12g041890 Kleisin-like bridging component NSE4 of homologous... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR014854 Nse4_C 220 299
No external refs found!