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  5. GSVIVT01025783001

GSVIVT01025783001 (CIP111)


Aliases : CIP111

Description : Calmodulin-interacting protein 111 OS=Arabidopsis thaliana


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01025783001
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AT2G03670 CDC48B cell division cycle 48B 0.04 OrthoFinder output from all 47 species
Adi_g003343 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054679 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080378 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g080379 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20068 CIP111 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07270 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000525.10 emb1354, CDC48C Cell division control protein 48 homolog C... 0.01 OrthoFinder output from all 47 species
Cre06.g269950 No alias Cell division control protein 48 homolog E... 0.02 OrthoFinder output from all 47 species
Dcu_g08248 No alias platform ATPase CDC48 & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g05730.1 LOC_Os03g05730 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Lfl_g39791 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
MA_10429450g0010 No alias Cell division control protein 48 homolog D... 0.05 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g06020 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01985 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18794 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010548 CDC48B platform ATPase CDC48 & original description: CDS=476-2146 0.04 OrthoFinder output from all 47 species
Sam_g12429 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g068330.4.1 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
Solyc10g084050.2.1 Solyc10g084050 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Solyc11g069720.2.1 Solyc11g069720 platform ATPase (CDC48) 0.04 OrthoFinder output from all 47 species
Spa_g12521 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g41958 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53868 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g13043 CDC48B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e035514_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.05 OrthoFinder output from all 47 species
Zm00001e036688_P001 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 437 566
IPR003959 ATPase_AAA_core 704 835
No external refs found!