GSVIVT01026372001 (PUB9, ATPUB9)

Aliases : PUB9, ATPUB9

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.U-Box E3 ligase activities.PUB-type

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01026372001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	PUB15,...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Adi_g102535	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03523	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g31832	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g16654	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g05074	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene01377.t1	PUB14, ATPUB14,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g02331	No alias	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g07191	PUB18, ATPUB18	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_10871	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
LOC_Os03g29280.1	LOC_Os03g29280	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_29517g0010	No alias	U-box domain-containing protein 12 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
Msp_g16068	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g38088	ATPUB17, PUB17	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g17320	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g30958	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382	No alias	not classified & original description: CDS=1-1704	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607	ATPUB17, PUB17	not classified & original description: CDS=1-2595	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097	No alias	not classified & original description: CDS=1-2154	0.02	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Spa_g24085	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g16798	ATPUB17, PUB17	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e019429_P001	Zm00001e019429	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e023475_P001	Zm00001e023475	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Zm00001e031915_P001	Zm00001e031915	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	74	143

External Links

No external refs found!

GSVIVT01026372001 (PUB9, ATPUB9)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation