GSVIVT01026769001 (PUB22)

Aliases : PUB22

Description : E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01026769001

Target	Alias	Description	ECC score	Gene Family Method
Als_g23643	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene12032.t1	PUB25, Aspi01Gene12032	U-Box-group-III E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44311.t1	PUB22, Aspi01Gene44311	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44314.t1	PUB23, Aspi01Gene44314	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44315.t1	PUB23, Aspi01Gene44315	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44316.t1	PUB23, Aspi01Gene44316	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44317.t1	PUB23, Aspi01Gene44317	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44318.t1	PUB23, Aspi01Gene44318	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene44321.t1	PUB23, Aspi01Gene44321	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.27G047700.1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g04484	PUB25	E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Dcu_g22421	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011139001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01011140001	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
GSVIVT01031720001	PUB26	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
MA_9494855g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp3g22740.1	PUB23	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp7g11000.1	PUB25	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g11020.1	PUB25	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Nbi_g06628	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42463	PUB23	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g44415	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g005160.4.1	Solyc01g005160	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005506	iron ion binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	19	88

External Links

No external refs found!

GSVIVT01026769001 (PUB22)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation