Description : Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana
Gene families : OG0004436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004436_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01027072001 | |
| Cluster | HCCA: Cluster_30 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00058p00122560 | evm_27.TU.AmTr_v1... | Ribosome biogenesis regulatory protein homolog... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.12G016900.1 | Ceric.12G016900 | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000215.62 | No alias | Ribosome biogenesis regulatory protein homolog... | 0.05 | OrthoFinder output from all 47 species | |
| Cre01.g020950 | No alias | Ribosome biogenesis regulatory protein homolog... | 0.17 | OrthoFinder output from all 47 species | |
| Gb_25591 | No alias | component ARRS1 of ARPF2-ARRS1 complex | 0.04 | OrthoFinder output from all 47 species | |
| Gb_41748 | No alias | component ARRS1 of ARPF2-ARRS1 complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g58830.1 | LOC_Os04g58830 | component ARRS1 of ARPF2-ARRS1 complex | 0.11 | OrthoFinder output from all 47 species | |
| Mp1g07840.1 | No alias | component ARRS1 of ARPF2-ARRS1 complex | 0.18 | OrthoFinder output from all 47 species | |
| Nbi_g06949 | No alias | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.03 | OrthoFinder output from all 47 species | |
| Pp3c3_32550V3.1 | Pp3c3_32550 | ribosome biogenesis regulatory protein (RRS1) family protein | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07664 | No alias | component *(ARRS1) of ARPF2-ARRS1 complex & original... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e016688_P001 | Zm00001e016688 | component ARRS1 of ARPF2-ARRS1 complex | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e025915_P002 | Zm00001e025915 | component ARRS1 of ARPF2-ARRS1 complex | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005634 | nucleus | IEA | Interproscan |
| BP | GO:0042254 | ribosome biogenesis | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | HCCA |
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004177 | aminopeptidase activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018208 | peptidyl-proline modification | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| CC | GO:0031361 | obsolete integral component of thylakoid membrane | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007023 | Ribosom_reg | 6 | 168 |
| No external refs found! |
