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  5. GSVIVT01028170001

GSVIVT01028170001


Description : Cell wall.pectin.homogalacturonan.modification and degradation.pectin methylesterase


Gene families : OG0000083 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028170001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00264470 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00206660 evm_27.TU.AmTr_v1... Pectinesterase QRT1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00056p00166920 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 OrthoFinder output from all 47 species
AT5G26810 No alias Pectin lyase-like superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g105814 No alias pectin methylesterase & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g127146 No alias pectin methylesterase & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g10289 No alias pectin methylesterase & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g25187 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05464 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06584 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g20106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene07325.t1 Aspi01Gene07325 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20189.t1 Aspi01Gene20189 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59345.t1 Aspi01Gene59345 pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G031400.1 Ceric.05G031400 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.1Z239300.1 Ceric.1Z239300 pectin methylesterase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.39G035900.1 Ceric.39G035900 pectin methylesterase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g09998 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06266 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11350 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11351 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g23946 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44261 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13696 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g38152 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g46321 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47291 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48343 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15499 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g07516 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g12450 No alias pectin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56779 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428610g0020 No alias pectin methylesterase 0.04 OrthoFinder output from all 47 species
MA_14449g0010 No alias pectin methylesterase 0.03 OrthoFinder output from all 47 species
Msp_g06289 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g39490 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g48436 ATPE11, PE11 pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c12_24000V3.1 Pp3c12_24000 Pectin lyase-like superfamily protein 0.01 OrthoFinder output from all 47 species
Ppi_g11138 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g02095 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g079180.4.1 Solyc01g079180 pectin methylesterase 0.03 OrthoFinder output from all 47 species
Solyc07g043240.4.1 Solyc07g043240 pectin methylesterase 0.06 OrthoFinder output from all 47 species
Spa_g31270 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40908 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49901 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50750 No alias pectin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54582 No alias pectin methylesterase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01655 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g07049 No alias pecTin methylesterase & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20547 No alias pecTin methylesterase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e027944_P002 ATPE11, PE11,... pectin methylesterase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 84 375
No external refs found!