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  5. GSVIVT01028843001

GSVIVT01028843001


Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.PAM68 protein


Gene families : OG0005725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01028843001
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00088520 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
AT4G19100 PAM68 Protein of unknown function (DUF3464) 0.05 OrthoFinder output from all 47 species
AT5G52780 No alias Protein of unknown function (DUF3464) 0.07 OrthoFinder output from all 47 species
Aev_g21605 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.05 OrthoFinder output from all 47 species
Ala_g26970 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Aob_g16015 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene55602.t1 PAM68, Aspi01Gene55602 protein involved in PS-II assembly *(PAM68) & original... 0.08 OrthoFinder output from all 47 species
Ceric.26G045700.1 PAM68, Ceric.26G045700 protein involved in PS-II assembly *(PAM68) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g28925 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Gb_03315 No alias PAM68 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
LOC_Os06g21530.1 PAM68, LOC_Os06g21530 PAM68 protein involved in PS-II assembly 0.06 OrthoFinder output from all 47 species
LOC_Os10g38910.1 LOC_Os10g38910 PAM68 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
MA_268175g0010 PAM68 PAM68 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
Ore_g07606 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Pir_g19463 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Ppi_g00344 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009124 PAM68 protein involved in PS-II assembly *(PAM68) & original... 0.05 OrthoFinder output from all 47 species
Solyc03g007860.1.1 Solyc03g007860 PAM68 protein involved in PS-II assembly 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR021855 PAM68-like 55 177
No external refs found!