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  5. GSVIVT01029605001

GSVIVT01029605001


Description : Protein Ycf2 OS=Vitis vinifera


Gene families : OG0003470 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01029605001
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00217120 YCF2.1,... Protein Ycf2 OS=Amborella trichopoda 0.08 OrthoFinder output from all 47 species
ATCG00860 YCF2.1 Chloroplast Ycf2;ATPase, AAA type, core 0.14 OrthoFinder output from all 47 species
ATCG01280 YCF2.2 Chloroplast Ycf2;ATPase, AAA type, core 0.14 OrthoFinder output from all 47 species
Solyc00g500037.1.1 YCF2.1, Solyc00g500037 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc00g500046.1.1 YCF2.1, Solyc00g500046 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc00g500081.1.1 YCF2.1, Solyc00g500081 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc00g500128.1.1 YCF2.1, Solyc00g500128 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc00g500198.1.1 YCF2.1, Solyc00g500198 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc00g500327.1.1 YCF2.1, Solyc00g500327 regulatory component YCF2 of AAA-ATPase motor complex 0.08 OrthoFinder output from all 47 species
Solyc02g014780.1.1 YCF2.1, Solyc02g014780 Protein Ycf2 OS=Nicotiana tabacum (sp|p09976|ycf2_tobac : 133.0) 0.05 OrthoFinder output from all 47 species
Solyc03g058250.1.1 YCF2.1, Solyc03g058250 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc04g024540.1.1 YCF2.1, Solyc04g024540 regulatory component YCF2 of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
Solyc10g019000.3.1 YCF2.1, Solyc10g019000 regulatory component YCF2 of AAA-ATPase motor complex 0.03 OrthoFinder output from all 47 species
Solyc12g035790.2.1 YCF2.1, Solyc12g035790 regulatory component YCF2 of AAA-ATPase motor complex 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR008543 Uncharacterised_Ycf2 1 74
No external refs found!