GSVIVT01030468001 (CSLB04, ATCSLB4, ATCSLB04)

Aliases : CSLB04, ATCSLB4, ATCSLB04

Description : Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica

Gene families : OG0000089 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000089_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: GSVIVT01030468001
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
Aev_g42384	MUR10, ATCESA7,...	glycosyltransferase *(CSLB/CSLH) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g14910	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.02	OrthoFinder output from all 47 species
Als_g40118	AtCESA1, RSW1, CESA1	catalytic component *(CesA) of cellulose synthase...	0.03	OrthoFinder output from all 47 species
Aob_g15979	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0230.g059145	IXR1, CEV1,...	catalytic component *(CesA) of cellulose synthase...	0.11	OrthoFinder output from all 47 species
Cba_g76047	ATH-A, CESA2, ATCESA2	catalytic component *(CesA) of cellulose synthase...	0.03	OrthoFinder output from all 47 species
Ceric.05G102500.1	ATCSLD3, KJK,...	mannan synthase *(CSLD) & original description:...	0.04	OrthoFinder output from all 47 species
Dde_g15568	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01004458001	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
GSVIVT01014705001	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.21	OrthoFinder output from all 47 species
GSVIVT01018144001	ATCSLG2, CSLG2	Cellulose synthase-like protein G2 OS=Arabidopsis thaliana	0.07	OrthoFinder output from all 47 species
GSVIVT01028234001	AtCESA1, RSW1, CESA1	Cell wall.cellulose.synthesis.cellulose synthase complex...	0.05	OrthoFinder output from all 47 species
Gb_02365	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Gb_02801	ATCSLD3, KJK, CSLD3	mannan synthase (CSLD)	0.03	OrthoFinder output from all 47 species
Gb_39671	ATCSLD3, KJK, CSLD3	mannan synthase (CSLD)	0.02	OrthoFinder output from all 47 species
LOC_Os07g24190.1	CESA6, PRC1,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
LOC_Os07g36630.1	ATCSLD5, CSLD5,...	D-glucan synthase (CSLF)	0.03	OrthoFinder output from all 47 species
LOC_Os08g06380.1	ATCSLD2, CSLD2,...	mannan synthase (CSLD). D-glucan synthase (CSLF)	0.03	OrthoFinder output from all 47 species
LOC_Os09g25490.1	MUR10, ATCESA7,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
LOC_Os09g30120.1	ATCSLE1, CSLE1,...	Cellulose synthase-like protein E1 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
LOC_Os10g20090.1	CSLB04, ATCSLB4,...	D-glucan synthase (CSLH)	0.06	OrthoFinder output from all 47 species
LOC_Os10g32980.1	CESA4, NWS2,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
MA_195271g0010	ATCSLE1, CSLE1	Cellulose synthase-like protein E6 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Msp_g28225	IXR1, CEV1,...	catalytic component *(CesA) of cellulose synthase...	0.03	OrthoFinder output from all 47 species
Pnu_g27759	ATCSLD3, KJK, CSLD3	mannan synthase *(CSLD) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g31509	IXR1, CEV1,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Solyc12g015770.3.1	ATCSLE1, CSLE1,...	NOB1 pre-rRNA processing endonuclease involved in ITS1...	0.03	OrthoFinder output from all 47 species
Zm00001e002486_P001	ATCSLD3, KJK,...	mannan synthase (CSLD)	0.03	OrthoFinder output from all 47 species
Zm00001e004630_P001	CESA4, NWS2,...	catalytic component CesA of cellulose synthase complex	0.02	OrthoFinder output from all 47 species
Zm00001e004740_P001	ATCSLD3, KJK,...	Probable mixed-linked glucan synthase 7 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Zm00001e009843_P002	MUR10, ATCESA7,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
Zm00001e019828_P001	CESA8, LEW2,...	catalytic component CesA of cellulose synthase complex	0.03	OrthoFinder output from all 47 species
Zm00001e033093_P003	IXR1, CEV1,...	catalytic component CesA of cellulose synthase complex	0.02	OrthoFinder output from all 47 species
Zm00001e034187_P001	MUR10, ATCESA7,...	catalytic component CesA of cellulose synthase complex	0.02	OrthoFinder output from all 47 species
Zm00001e035207_P001	ATCSLD3, KJK,...	D-glucan synthase (CSLF)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEA	Interproscan
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	IEA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	HCCA
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005150	Cellulose_synth	911	1197
IPR005150	Cellulose_synth	1206	1559
IPR005150	Cellulose_synth	390	750
IPR005150	Cellulose_synth	95	382

External Links

No external refs found!

GSVIVT01030468001 (CSLB04, ATCSLB4, ATCSLB04)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation