Aliases : YCF4
Description : Photosystem I assembly protein Ycf4 OS=Vitis vinifera
Gene families : OG0009318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009318_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: GSVIVT01030619001 | |
| Cluster | HCCA: Cluster_20 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s02490p00007250 | YCF4,... | Photosystem I assembly protein Ycf4 OS=Amborella trichopoda | 0.07 | OrthoFinder output from all 47 species | |
| ATCG00520 | YCF4 | unfolded protein binding | 0.12 | OrthoFinder output from all 47 species | |
| Aev_g15963 | YCF4 | protein involved in PS-I assembly *(YCF4) & original... | 0.12 | OrthoFinder output from all 47 species | |
| Aob_g29003 | YCF4 | protein involved in PS-I assembly *(YCF4) & original... | 0.06 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000196 | No alias | not classified & original description: CDS=1-402 | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.05G050000.1 | YCF4, Ceric.05G050000 | protein involved in PS-I assembly *(YCF4) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Ceric.29G033700.1 | YCF4, Ceric.29G033700 | protein involved in PS-I assembly *(YCF4) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.38G006800.1 | YCF4, Ceric.38G006800 | protein involved in PS-I assembly *(YCF4) & original... | 0.11 | OrthoFinder output from all 47 species | |
| Gb_22391 | YCF4 | YCF4 protein involved in PS-I assembly | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os01g58049.1 | LOC_Os01g58049 | YCF4 protein involved in PS-I assembly | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os02g24604.1 | YCF4, LOC_Os02g24604 | YCF4 protein involved in PS-I assembly | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os06g39744.1 | YCF4, LOC_Os06g39744 | YCF4 protein involved in PS-I assembly | 0.11 | OrthoFinder output from all 47 species | |
| MA_36633g0010 | No alias | Photosystem I assembly protein Ycf4 OS=Pinus koraiensis... | 0.04 | OrthoFinder output from all 47 species | |
| Mpzg00380.1 | YCF4 | YCF4 protein involved in PS-I assembly | 0.02 | OrthoFinder output from all 47 species | |
| Solyc00g500019.1.1 | YCF4, Solyc00g500019 | Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... | 0.09 | OrthoFinder output from all 47 species | |
| Solyc00g500066.1.1 | YCF4, Solyc00g500066 | Photosystem I assembly protein Ycf4 OS=Solanum tuberosum... | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0009522 | photosystem I | IEA | Interproscan |
| CC | GO:0009579 | thylakoid | IEA | Interproscan |
| BP | GO:0015979 | photosynthesis | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
| No external refs found! |
