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  5. GSVIVT01031035001

GSVIVT01031035001


Description : RNA biosynthesis.transcriptional activation.AS2/LOB transcription factor


Gene families : OG0001073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031035001
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00088960 LBD41,... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 OrthoFinder output from all 47 species
AMTR_s00137p00087340 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 OrthoFinder output from all 47 species
AT1G67100 LBD40 LOB domain-containing protein 40 0.06 OrthoFinder output from all 47 species
AT3G02550 LBD41 LOB domain-containing protein 41 0.16 OrthoFinder output from all 47 species
AT5G67420 LBD37, ASL39 LOB domain-containing protein 37 0.06 OrthoFinder output from all 47 species
Adi_g024595 LBD38 AS2/LOB-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g036525 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g048099 LBD39 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g082772 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08245 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20695 LBD37, ASL39 AS2/LOB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07731 LBD38 AS2/LOB-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g11822 LBD38 AS2/LOB-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene38372.t1 LBD38, Aspi01Gene38372 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07413 LBD38 AS2/LOB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.08G070700.1 LBD38, Ceric.08G070700 AS2/LOB-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011896001 LBD42 RNA biosynthesis.transcriptional activation.AS2/LOB... 0.07 OrthoFinder output from all 47 species
Gb_36942 LBD40 transcription factor (AS2/LOB) 0.07 OrthoFinder output from all 47 species
Gb_36943 LBD40 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
LOC_Os01g20800.1 LOC_Os01g20800 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g32770.1 LBD41, LOC_Os01g32770 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
LOC_Os03g33090.1 LOC_Os03g33090 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
Lfl_g26418 LBD39 AS2/LOB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_19934g0010 LBD40 transcription factor (AS2/LOB) 0.03 OrthoFinder output from all 47 species
MA_223267g0010 LBD40 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_70989g0010 LBD40 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
MA_80122g0010 LBD42 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Solyc03g119530.3.1 LBD41, Solyc03g119530 transcription factor (AS2/LOB) 0.15 OrthoFinder output from all 47 species
Solyc04g077990.3.1 LBD38, Solyc04g077990 transcription factor (AS2/LOB) 0.06 OrthoFinder output from all 47 species
Zm00001e001981_P001 LBD41, Zm00001e001981 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e005129_P001 LBD37, ASL39,... transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species
Zm00001e027415_P001 LBD41, Zm00001e027415 transcription factor (AS2/LOB) 0.1 OrthoFinder output from all 47 species
Zm00001e027417_P001 LBD41, Zm00001e027417 transcription factor (AS2/LOB) 0.04 OrthoFinder output from all 47 species
Zm00001e032150_P001 LBD41, Zm00001e032150 transcription factor (AS2/LOB) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
InterPro domains Description Start Stop
IPR004883 LOB 4 103
No external refs found!