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  5. GSVIVT01031710001

GSVIVT01031710001


Description : Protein degradation.ER-associated protein degradation (ERAD) machinery.Doa10 ubiquitin ligase component


Gene families : OG0001940 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01031710001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00035p00240580 evm_27.TU.AmTr_v1... Protein degradation.ER-associated protein degradation... 0.03 OrthoFinder output from all 47 species
AT4G34100 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g016583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g073698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08474 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.05 OrthoFinder output from all 47 species
Aspi01Gene51882.t1 Aspi01Gene51882 E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Cba_g11850 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Ceric.22G052000.1 Ceric.22G052000 E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.05 OrthoFinder output from all 47 species
Dcu_g03181 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.06 OrthoFinder output from all 47 species
Dde_g02988 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Gb_37944 No alias ubiquitin ligase component Doa10 of ER-associated... 0.07 OrthoFinder output from all 47 species
LOC_Os06g43210.1 LOC_Os06g43210 ubiquitin ligase component Doa10 of ER-associated... 0.06 OrthoFinder output from all 47 species
Len_g21857 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
MA_130450g0010 No alias ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Mp2g15190.1 No alias ubiquitin ligase component Doa10 of ER-associated... 0.04 OrthoFinder output from all 47 species
Nbi_g25567 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Sam_g13534 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.09 OrthoFinder output from all 47 species
Solyc01g107880.3.1 Solyc01g107880 ubiquitin ligase component Doa10 of ER-associated... 0.03 OrthoFinder output from all 47 species
Spa_g19268 No alias E3 ubiquitin ligase component *(Doa10) of ER-associated... 0.03 OrthoFinder output from all 47 species
Zm00001e030477_P001 Zm00001e030477 ubiquitin ligase component Doa10 of ER-associated... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 60 106
No external refs found!