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  5. GSVIVT01032911001

GSVIVT01032911001 (TCP13, TFPD, PTF1)


Aliases : TCP13, TFPD, PTF1

Description : RNA biosynthesis.transcriptional activation.TCP transcription factor


Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032911001

Target Alias Description ECC score Gene Family Method Actions
AT2G31070 TCP10 TCP domain protein 10 0.05 OrthoFinder output from all 47 species
AT3G15030 TCP4, MEE35 TCP family transcription factor 4 0.05 OrthoFinder output from all 47 species
Adi_g000708 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03629 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02912.t1 ATTCP24, TCP24,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Gb_18221 TCP4, MEE35 transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Gb_30049 TCP2 transcription factor (TCP) 0.02 OrthoFinder output from all 47 species
Gb_38379 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os12g42190.1 ATTCP24, TCP24,... transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Ore_g32494 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g077250.2.1 TCP4, MEE35,... transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc03g045030.2.1 TCP12, BRC2,... transcription factor (TCP) 0.06 OrthoFinder output from all 47 species
Solyc06g069240.2.1 TCP12, BRC2,... transcription factor (TCP) 0.05 OrthoFinder output from all 47 species
Solyc10g008780.1.1 TCP10, Solyc10g008780 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 138 225
No external refs found!