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  5. GSVIVT01032994001

GSVIVT01032994001


Description : Putative pentatricopeptide repeat-containing protein At2g01510 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01032994001
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00263110 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 OrthoFinder output from all 47 species
AMTR_s00010p00220510 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AMTR_s00012p00252800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
AMTR_s00016p00242080 CRR28,... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00190360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
AMTR_s00038p00071780 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g26540... 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00127300 MEF22,... Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
AMTR_s00063p00172440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00129p00082590 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g19720... 0.04 OrthoFinder output from all 47 species
AMTR_s00155p00018120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
AT1G06140 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT1G69350 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G13600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G28660 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G20770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G38010 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from all 47 species
AT5G65570 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g004476 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68032 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34884.t1 Aspi01Gene34884 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0048.g030525 No alias not classified & original description: CDS=1-2520 0.03 OrthoFinder output from all 47 species
Cba_g27366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g06473 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07150 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g07701 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17044 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23635 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g29335 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01035491001 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
Gb_02379 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_07442 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 OrthoFinder output from all 47 species
Gb_08671 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 OrthoFinder output from all 47 species
Gb_12372 CRR22 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Gb_23320 CRR22 RNA editing factor (OTP82) 0.05 OrthoFinder output from all 47 species
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Gb_32439 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Gb_33070 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_33311 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_33693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_33726 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Gb_36839 OTP84 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Gb_38249 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
LOC_Os01g01115.1 LOC_Os01g01115 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os01g19380.1 LOC_Os01g19380 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g11700.1 MEF19, LOC_Os03g11700 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
LOC_Os03g56850.1 LOC_Os03g56850 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
LOC_Os03g63260.3 LOC_Os03g63260 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os03g63510.1 LOC_Os03g63510 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os04g33840.1 LOC_Os04g33840 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os05g05490.1 LOC_Os05g05490 Pentatricopeptide repeat-containing protein At3g05340... 0.04 OrthoFinder output from all 47 species
LOC_Os05g30710.1 LOC_Os05g30710 Pentatricopeptide repeat-containing protein At1g20230... 0.04 OrthoFinder output from all 47 species
LOC_Os05g49740.1 EMB2744, LOC_Os05g49740 Pentatricopeptide repeat-containing protein At5g39680... 0.03 OrthoFinder output from all 47 species
LOC_Os06g12510.1 LOC_Os06g12510 Pentatricopeptide repeat-containing protein At5g15300... 0.04 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os07g13540.1 EMB2261, LOC_Os07g13540 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
LOC_Os07g20420.1 LOC_Os07g20420 Pentatricopeptide repeat-containing protein At3g26782,... 0.05 OrthoFinder output from all 47 species
LOC_Os08g04400.1 LOC_Os08g04400 Pentatricopeptide repeat-containing protein At5g50390,... 0.05 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
LOC_Os10g34720.1 LOI1, MEF11,... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37330.2 LOI1, MEF11,... RNA editing factor (MEF11) 0.05 OrthoFinder output from all 47 species
Len_g33284 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_112594g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_122546g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
MA_138190g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 OrthoFinder output from all 47 species
MA_14659g0010 OTP84 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_14938g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 OrthoFinder output from all 47 species
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_211508g0010 CRR22 Pentatricopeptide repeat-containing protein DOT4,... 0.04 OrthoFinder output from all 47 species
MA_22485g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
MA_2473g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_24849g0010 CRR22 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_25584g0010 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
MA_25729g0010 REME1 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
MA_305950g0010 EMB2261 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_38395g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_412g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.04 OrthoFinder output from all 47 species
MA_53781g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_7691g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_812716g0010 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.04 OrthoFinder output from all 47 species
MA_81436g0010 OTP84 Pentatricopeptide repeat-containing protein At4g21300... 0.03 OrthoFinder output from all 47 species
MA_905781g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_958908g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
Msp_g33669 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g090510.2.1 Solyc01g090510 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.04 OrthoFinder output from all 47 species
Solyc02g014360.3.1 LOI1, MEF11,... RNA editing factor (MEF11) 0.03 OrthoFinder output from all 47 species
Solyc02g065030.1.1 EMB2758, Solyc02g065030 Pentatricopeptide repeat-containing protein DOT4,... 0.07 OrthoFinder output from all 47 species
Solyc02g068630.1.1 Solyc02g068630 Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
Solyc02g076700.1.1 Solyc02g076700 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Solyc02g082160.2.1 CRR22, Solyc02g082160 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Solyc03g006990.1.1 Solyc03g006990 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Solyc03g063690.1.1 MEF1, Solyc03g063690 RNA editing factor (MEF1) 0.07 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.04 OrthoFinder output from all 47 species
Solyc03g114660.1.1 Solyc03g114660 Pentatricopeptide repeat-containing protein At1g18485... 0.03 OrthoFinder output from all 47 species
Solyc05g009400.3.1 Solyc05g009400 Pentatricopeptide repeat-containing protein At3g29230... 0.04 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Solyc06g068810.4.1 Solyc06g068810 Pentatricopeptide repeat-containing protein At5g50990... 0.06 OrthoFinder output from all 47 species
Solyc06g069700.4.1 Solyc06g069700 Pentatricopeptide repeat-containing protein At5g61400... 0.04 OrthoFinder output from all 47 species
Solyc06g084580.1.1 Solyc06g084580 Pentatricopeptide repeat-containing protein At4g20770... 0.04 OrthoFinder output from all 47 species
Solyc07g042760.1.1 Solyc07g042760 Pentatricopeptide repeat-containing protein At4g31070,... 0.05 OrthoFinder output from all 47 species
Solyc07g053520.2.1 SLO1, Solyc07g053520 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Solyc07g055310.1.1 Solyc07g055310 Pentatricopeptide repeat-containing protein At2g41080... 0.03 OrthoFinder output from all 47 species
Solyc07g065730.1.1 Solyc07g065730 Pentatricopeptide repeat-containing protein At5g66520... 0.04 OrthoFinder output from all 47 species
Solyc08g023640.1.1 Solyc08g023640 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Solyc09g009950.4.1 Solyc09g009950 RNA editing factor (MEF10) 0.03 OrthoFinder output from all 47 species
Solyc11g006940.3.1 Solyc11g006940 component Sm-G of U1/U2/U4/U5-associated Sm accessory... 0.05 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.06 OrthoFinder output from all 47 species
Solyc11g008970.1.1 Solyc11g008970 Pentatricopeptide repeat-containing protein At4g39952,... 0.04 OrthoFinder output from all 47 species
Solyc11g066920.1.1 CRR28, Solyc11g066920 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Zm00001e010837_P001 LPA66, Zm00001e010837 Pentatricopeptide repeat-containing protein At5g48910... 0.06 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Zm00001e018565_P001 Zm00001e018565 Pentatricopeptide repeat-containing protein At3g13880... 0.07 OrthoFinder output from all 47 species
Zm00001e023504_P001 CRR22, Zm00001e023504 Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
Zm00001e025557_P001 Zm00001e025557 Pentatricopeptide repeat-containing protein At5g56310... 0.05 OrthoFinder output from all 47 species
Zm00001e026608_P001 Zm00001e026608 Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
Zm00001e031660_P001 Zm00001e031660 Pentatricopeptide repeat-containing protein At4g14170... 0.03 OrthoFinder output from all 47 species
Zm00001e034478_P001 Zm00001e034478 Pentatricopeptide repeat-containing protein At3g24000,... 0.04 OrthoFinder output from all 47 species
Zm00001e035654_P001 EMB2758, Zm00001e035654 Pentatricopeptide repeat-containing protein At4g33990... 0.04 OrthoFinder output from all 47 species
Zm00001e036301_P001 Zm00001e036301 Pentatricopeptide repeat-containing protein At4g30700... 0.04 OrthoFinder output from all 47 species
Zm00001e037600_P001 Zm00001e037600 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Zm00001e039394_P003 Zm00001e039394 Pentatricopeptide repeat-containing protein At5g04780,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006353 DNA-templated transcription termination IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 477 524
IPR002885 Pentatricopeptide_repeat 377 421
IPR002885 Pentatricopeptide_repeat 109 154
IPR002885 Pentatricopeptide_repeat 183 206
IPR002885 Pentatricopeptide_repeat 350 369
IPR002885 Pentatricopeptide_repeat 79 107
IPR002885 Pentatricopeptide_repeat 277 302
IPR002885 Pentatricopeptide_repeat 552 575
IPR002885 Pentatricopeptide_repeat 249 273
IPR002885 Pentatricopeptide_repeat 619 647
IPR032867 DYW_dom 653 775
No external refs found!