GSVIVT01033654001


Description : Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033654001

Target Alias Description ECC score Gene Family Method Actions
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g002040 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003781 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g003870 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005693 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022884 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g023691 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036802 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g058169 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058786 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g060857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g068879 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101211 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101227 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g104368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g113395 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g44730 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17011 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17617 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23642 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g24332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g33998 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36188 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03252 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06720 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06731 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03536 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23995 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g59941 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g68030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene00209.t1 EMB2758, Aspi01Gene00209 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34785.t1 Aspi01Gene34785 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35082.t1 Aspi01Gene35082 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45795.t1 Aspi01Gene45795 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene54509.t1 Aspi01Gene54509 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65182.t1 OTP86, Aspi01Gene65182 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene67429.t2 Aspi01Gene67429 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0004.g008858 No alias not classified & original description: CDS=1-2760 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g009227 No alias not classified & original description: CDS=1-1950 0.04 OrthoFinder output from all 47 species
Azfi_s0008.g011443 No alias not classified & original description: CDS=1-2145 0.04 OrthoFinder output from all 47 species
Azfi_s0090.g042650 No alias not classified & original description: CDS=1-1848 0.05 OrthoFinder output from all 47 species
Azfi_s0503.g073904 No alias not classified & original description: CDS=1-2580 0.03 OrthoFinder output from all 47 species
Azfi_s0626.g079975 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2118 0.03 OrthoFinder output from all 47 species
Cba_g06580 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19908 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34432 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g35153 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G093000.1 Ceric.05G093000 not classified & original description: pacid=50577993... 0.03 OrthoFinder output from all 47 species
Ceric.11G087600.1 OTP84, Ceric.11G087600 not classified & original description: pacid=50595872... 0.03 OrthoFinder output from all 47 species
Ceric.25G070400.1 Ceric.25G070400 not classified & original description: pacid=50594567... 0.02 OrthoFinder output from all 47 species
Ceric.28G037300.1 Ceric.28G037300 not classified & original description: pacid=50570602... 0.03 OrthoFinder output from all 47 species
Dac_g05106 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g31616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g35459 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26239 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45850 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g15843 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13325 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17074 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17712 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18446 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23295 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26396 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g26917 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26930 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.06 OrthoFinder output from all 47 species
Len_g03900 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g04337 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g14105 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g16917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17588 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43024 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g54500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g59017 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g03305 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g03398 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07683 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07761 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g09949 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28057 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29257 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g40090 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_8893194g0010 MEF1 RNA editing factor (MEF1) 0.03 OrthoFinder output from all 47 species
Msp_g01336 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g03529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23160 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g24622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g33650 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g41129 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g43460 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g45690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g06214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g15698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23872 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g38541 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g42976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08923 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g09916 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30175 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g37149 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63391 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04533 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15319 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15726 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g16170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g16657 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22601 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g23429 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26686 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30091 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g48074 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55046 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55608 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62422 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002062 No alias not classified & original description: CDS=1-1716 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016986 No alias not classified & original description: CDS=1-1749 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0125.g021689 No alias S-adenosyl methionine transporter *(GOSAMT) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g026002 No alias not classified & original description: CDS=74-2389 0.03 OrthoFinder output from all 47 species
Sam_g21254 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo91775 No alias Pentatricopeptide repeat-containing protein At4g25270,... 0.03 OrthoFinder output from all 47 species
Spa_g05105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12442 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g50800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g55549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g18426 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g30039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g35685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e013166_P001 Zm00001e013166 Pentatricopeptide repeat-containing protein At4g14820... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 74 95
IPR002885 Pentatricopeptide_repeat 274 298
IPR002885 Pentatricopeptide_repeat 173 193
IPR002885 Pentatricopeptide_repeat 2 47
IPR002885 Pentatricopeptide_repeat 202 246
IPR002885 Pentatricopeptide_repeat 100 142
IPR032867 DYW_dom 374 497
No external refs found!