GSVIVT01033906001


Description : Putative pentatricopeptide repeat-containing protein At5g37570 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033906001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00262470 OTP85 Pentatricopeptide repeat-containing protein At2g02980,... 0.03 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
AMTR_s03531p00004900 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g02330,... 0.03 OrthoFinder output from all 47 species
AT4G01030 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 OrthoFinder output from all 47 species
AT5G61400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g005693 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g014779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g015809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g034009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g053631 MEF19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057717 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g067302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g095207 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g101241 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g29329 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g36953 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g12452 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16619 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36515 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37258 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07162 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g07405 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g08654 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19869 LPA66 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g21031 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g24105 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g59722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g60956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g63667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g18696 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g23363 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g24083 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27260 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04634 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g08782 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g16765 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene03718.t1 Aspi01Gene03718 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene08990.t1 OTP84, Aspi01Gene08990 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11765.t1 EMB2261, Aspi01Gene11765 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13090.t1 Aspi01Gene13090 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18568.t1 Aspi01Gene18568 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24054.t1 OTP82, Aspi01Gene24054 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31781.t1 Aspi01Gene31781 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene34733.t1 Aspi01Gene34733 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34780.t1 Aspi01Gene34780 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene34816.t1 Aspi01Gene34816 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38374.t1 Aspi01Gene38374 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64477.t1 OTP82, Aspi01Gene64477 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene69669.t1 CRR22, Aspi01Gene69669 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72928.t1 Aspi01Gene72928 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0034.g025187 OTP84 not classified & original description: CDS=1-2199 0.03 OrthoFinder output from all 47 species
Azfi_s0045.g030112 No alias not classified & original description: CDS=94-318 0.04 OrthoFinder output from all 47 species
Azfi_s0050.g030992 No alias not classified & original description: CDS=1-2877 0.02 OrthoFinder output from all 47 species
Cba_g05190 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g05214 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05301 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29502 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29878 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g44516 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g45997 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67304 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g75809 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G015100.1 Ceric.04G015100 not classified & original description: pacid=50632156... 0.03 OrthoFinder output from all 47 species
Ceric.07G028700.1 Ceric.07G028700 not classified & original description: pacid=50626039... 0.03 OrthoFinder output from all 47 species
Ceric.1Z254100.1 Ceric.1Z254100 not classified & original description: pacid=50632850... 0.04 OrthoFinder output from all 47 species
Ceric.22G072200.1 Ceric.22G072200 not classified & original description: pacid=50614353... 0.03 OrthoFinder output from all 47 species
Ceric.36G058400.1 Ceric.36G058400 not classified & original description: pacid=50568396... 0.04 OrthoFinder output from all 47 species
Dac_g02368 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g04509 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14692 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g25167 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30493 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g44035 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g06339 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07748 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08616 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08946 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g16545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g16812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17309 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20608 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g33764 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g43978 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04434 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13626 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21829 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28218 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g39554 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g08680.1 LOC_Os03g08680 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
LOC_Os03g55840.1 LOC_Os03g55840 Pentatricopeptide repeat-containing protein DWY1,... 0.03 OrthoFinder output from all 47 species
LOC_Os04g58980.1 LOC_Os04g58980 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os07g10400.1 CRR22, LOC_Os07g10400 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
LOC_Os07g47370.1 LOC_Os07g47370 Pentatricopeptide repeat-containing protein At4g32430,... 0.03 OrthoFinder output from all 47 species
Len_g05404 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g37271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g53877 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06094 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06749 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07063 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07089 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07397 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g07436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07499 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07808 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g13055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g14363 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g23637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g28173 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g32657 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g35996 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37521 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40764 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10317671g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 OrthoFinder output from all 47 species
MA_9463538g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
Msp_g17712 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g34215 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g20126 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g32187 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g01500 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07471 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g12671 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g22392 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23513 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g42021 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12221 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12828 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13384 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g46864 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57998 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g59834 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g63803 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06423 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g07605 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31871 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g41025 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52632 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53545 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g53559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53979 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004227 No alias not classified & original description: CDS=1-2520 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0020.g008229 No alias not classified & original description: CDS=1-3597 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011812 OTP84 not classified & original description: CDS=1-1944 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021137 No alias ssDNA-binding protein *(OSB) & original description: CDS=1-933 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0132.g022190 No alias not classified & original description: CDS=1-2487 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0170.g024361 OTP84 cyclin-dependent kinase inhibitor *(KRP/ICK) & original... 0.03 OrthoFinder output from all 47 species
Sam_g03859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g09072 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g14540 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27677 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28859 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g38610 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51690 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo100621 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Smo118230 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
Smo131170 VAC1, ECB2, ATECB2 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Smo34638 REME1 Pentatricopeptide repeat-containing protein At2g03880,... 0.05 OrthoFinder output from all 47 species
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Smo82255 CRR2 Pentatricopeptide repeat-containing protein At4g33990... 0.03 OrthoFinder output from all 47 species
Smo91949 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 OrthoFinder output from all 47 species
Solyc02g088650.1.1 Solyc02g088650 Pentatricopeptide repeat-containing protein At5g39350... 0.04 OrthoFinder output from all 47 species
Spa_g05402 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g05652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g10134 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18196 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21849 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g24508 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g33712 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g54818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05391 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06120 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06632 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g10269 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g12958 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26504 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26745 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g28558 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g29955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g30384 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43830 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g43907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45519 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e020583_P001 Zm00001e020583 Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
Zm00001e022858_P001 Zm00001e022858 Pentatricopeptide repeat-containing protein At3g57430,... 0.03 OrthoFinder output from all 47 species
Zm00001e031693_P001 Zm00001e031693 Pentatricopeptide repeat-containing protein At4g14050,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 266 310
IPR002885 Pentatricopeptide_repeat 382 429
IPR002885 Pentatricopeptide_repeat 134 183
IPR002885 Pentatricopeptide_repeat 457 481
IPR002885 Pentatricopeptide_repeat 208 237
No external refs found!