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  5. GSVIVT01033984001

GSVIVT01033984001


Description : UPF0481 protein At3g47200 OS=Arabidopsis thaliana


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01033984001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00075010 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00016p00254630 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00151010 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00023p00152840 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00023p00152880 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00023p00153750 evm_27.TU.AmTr_v1... UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00023p00153970 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00023p00155530 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00170960 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00023p00171000 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00023p00171820 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00023p00172000 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00170840 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00033p00171210 evm_27.TU.AmTr_v1... Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00066p00120870 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G65985 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT2G36430 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
AT3G44710 No alias Plant protein of unknown function (DUF247) 0.01 OrthoFinder output from all 47 species
AT3G47200 No alias Plant protein of unknown function (DUF247) 0.01 OrthoFinder output from all 47 species
AT3G47210 No alias Plant protein of unknown function (DUF247) 0.01 OrthoFinder output from all 47 species
AT3G47250 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT3G50130 No alias Plant protein of unknown function (DUF247) 0.01 OrthoFinder output from all 47 species
AT3G50150 No alias Plant protein of unknown function (DUF247) 0.02 OrthoFinder output from all 47 species
AT5G22540 No alias Plant protein of unknown function (DUF247) 0.03 OrthoFinder output from all 47 species
Aev_g02345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g16580 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12369 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g13692 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g13693 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g19466 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g26067 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g33018 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g21179 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11429 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21830 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67499 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19103.t1 Aspi01Gene19103 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48410.t1 Aspi01Gene48410 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48413.t1 Aspi01Gene48413 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48415.t1 Aspi01Gene48415 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene49158.t1 Aspi01Gene49158 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene53577.t1 Aspi01Gene53577 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene55382.t1 Aspi01Gene55382 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61822.t1 Aspi01Gene61822 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene62946.t1 Aspi01Gene62946 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene70527.t1 Aspi01Gene70527 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene72945.t1 Aspi01Gene72945 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.08G043000.1 Ceric.08G043000 not classified & original description: pacid=50637921... 0.01 OrthoFinder output from all 47 species
Ceric.08G043100.1 Ceric.08G043100 not classified & original description: pacid=50638846... 0.01 OrthoFinder output from all 47 species
Dac_g11943 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g22021 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g36449 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g41114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g42918 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g13206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03345 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g19655 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g26830 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g26945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g27578 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g48193 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g50229 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52253 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g52603 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01017512001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01027389001 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_03494 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_15961 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_20047 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_20052 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Gb_37284 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_37289 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Gb_41270 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os01g38120.1 LOC_Os01g38120 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os03g06730.1 LOC_Os03g06730 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
LOC_Os08g42570.1 LOC_Os08g42570 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os11g33394.1 LOC_Os11g33394 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os11g33942.1 LOC_Os11g33942 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os11g34090.1 LOC_Os11g34090 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g00593 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g18264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g35601 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g42582 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436979g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_413488g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_6919317g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_6958038g0010 No alias Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp2g23330.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g11037 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g38082 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g09756 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19917 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g14464 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g15594 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g34400 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g37513 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50677 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g55892 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g66075 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g66141 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g63876 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0185.g024999 No alias not classified & original description: CDS=1-447 0.08 OrthoFinder output from all 47 species
Solyc04g008900.4.1 Solyc04g008900 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
Spa_g25794 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g26898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g27969 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04556 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15406 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g37795 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e036342_P001 Zm00001e036342 Putative UPF0481 protein At3g02645 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 60 230
No external refs found!