1. Home
  2. Species
  3. Vitis vinifera
  4. Sequence
  5. GSVIVT01034942001

GSVIVT01034942001 (UPL6)


Aliases : UPL6

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.HECT E3 monomeric ligase


Gene families : OG0001555 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001555_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01034942001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00255750 UPL7,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00213880 UPL6,... Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
AT3G17205 UPL6 ubiquitin protein ligase 6 0.14 OrthoFinder output from all 47 species
AT3G53090 UPL7 ubiquitin-protein ligase 7 0.08 OrthoFinder output from all 47 species
Adi_g010409 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g04174 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g11314 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07294 UPL6 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g07504 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62754 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.1 OrthoFinder output from all 47 species
Aob_g15928 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g20441 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g10603 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15620.t1 UPL6, Aspi01Gene15620 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18040.t1 UPL6, Aspi01Gene18040 E3 ubiquitin ligase *(UPL6) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene18054.t1 UPL6, Aspi01Gene18054 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene18054.t4 UPL6, Aspi01Gene18054 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene62697.t1 UPL7, Aspi01Gene62697 E3 ubiquitin ligase *(UPL6) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0006.g009688 UPL7 E3 ubiquitin ligase *(UPL6) & original description: CDS=1-3648 0.04 OrthoFinder output from all 47 species
Ceric.05G020700.1 UPL6, Ceric.05G020700 E3 ubiquitin ligase *(UPL6) & original description:... 0.09 OrthoFinder output from all 47 species
Ceric.1Z062300.1 UPL7, Ceric.1Z062300 E3 ubiquitin ligase *(UPL6) & original description:... 0.07 OrthoFinder output from all 47 species
Cre03.g159200 UPL7 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Cre06.g280300 UPL6 E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g02012 UPL7 E3 ubiquitin ligase *(UPL6) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g10609 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15093 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04194 UPL6 monomeric E3 ubiquitin ligase (HECT) 0.05 OrthoFinder output from all 47 species
Gb_22218 UPL7 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
LOC_Os05g06690.1 UPL6, LOC_Os05g06690 monomeric E3 ubiquitin ligase (HECT) 0.12 OrthoFinder output from all 47 species
Lfl_g08600 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.09 OrthoFinder output from all 47 species
MA_10260113g0010 UPL7 monomeric E3 ubiquitin ligase (HECT) 0.01 OrthoFinder output from all 47 species
MA_10436808g0010 UPL6 E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g18370.1 UPL6 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
Mp7g02100.1 UPL7 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
Ore_g08375 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g00663 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g05330 UPL6 E3 ubiquitin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005368 UPL7 E3 ubiquitin ligase *(UPL6) & original description: CDS=254-3667 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014924 UPL6 E3 ubiquitin ligase *(UPL6) & original description: CDS=293-3301 0.03 OrthoFinder output from all 47 species
Sam_g16308 No alias E3 ubiquitin ligase *(UPL6) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g39628 No alias E3 ubiquitin ligase *(UPL6) & original description: none 0.02 OrthoFinder output from all 47 species
Smo443962 UPL6 Protein degradation.peptide tagging.Ubiquitin... 0.07 OrthoFinder output from all 47 species
Solyc01g057900.3.1 UPL6, Solyc01g057900 monomeric E3 ubiquitin ligase (HECT) 0.1 OrthoFinder output from all 47 species
Tin_g13531 UPL6 E3 ubiquiTin ligase *(UPL6) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012275_P001 UPL7, Zm00001e012275 monomeric E3 ubiquitin ligase (HECT) 0.03 OrthoFinder output from all 47 species
Zm00001e031128_P003 UPL6, Zm00001e031128 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Zm00001e039899_P001 UPL6, Zm00001e039899 monomeric E3 ubiquitin ligase (HECT) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000569 HECT_dom 729 1034
No external refs found!