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  5. GSVIVT01035660001

GSVIVT01035660001


Description : Protein biosynthesis.translation initiation.pre-initiation complex (PIC).eIF3 mRNA-to-PIC binding complex.eIF3l component


Gene families : OG0004705 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004705_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01035660001
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00071210 evm_27.TU.AmTr_v1... Protein biosynthesis.translation... 0.04 OrthoFinder output from all 47 species
Aop_g00719 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene21773.t1 Aspi01Gene21773 component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Azfi_s0033.g024996 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.15 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Cre17.g697450 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Dac_g02249 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.04 OrthoFinder output from all 47 species
Ehy_g02703 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Gb_07559 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
LOC_Os05g13950.1 LOC_Os05g13950 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.08 OrthoFinder output from all 47 species
MA_4833g0010 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
MA_4833g0020 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
MA_525836g0010 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species
Mp3g02920.1 No alias component eIF3l of eIF3 mRNA-to-PIC binding complex 0.06 OrthoFinder output from all 47 species
Ore_g16455 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Smo146079 No alias Protein biosynthesis.translation... 0.03 OrthoFinder output from all 47 species
Solyc08g068340.3.1 Solyc08g068340 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.05 OrthoFinder output from all 47 species
Spa_g01339 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Tin_g07453 No alias component *(eIF3l) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e016402_P001 Zm00001e016402 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.07 OrthoFinder output from all 47 species
Zm00001e026109_P001 Zm00001e026109 component eIF3l of eIF3 mRNA-to-PIC binding complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR019382 eIF3l 1 364
No external refs found!