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  5. GSVIVT01037585001

GSVIVT01037585001 (PUB23)


Aliases : PUB23

Description : E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana


Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037585001
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT3G11840 PUB24 plant U-box 24 0.03 OrthoFinder output from all 47 species
Ala_g20026 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g47570 PUB25 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g11371 No alias E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene07828.t1 PUB26, Aspi01Gene07828 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18467.t1 PUB23, Aspi01Gene18467 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19337.t1 PUB26, Aspi01Gene19337 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19351.t1 Aspi01Gene19351 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03660 PUB23 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g16036 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03802 PUB26 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g11730.1 PUB25 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Nbi_g06628 PUB25 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10378 PUB26 U-Box-group-III E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo403954 PUB25 U-box domain-containing protein 25 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e040292_P001 PUB8, B80, Zm00001e040292 U-box domain-containing protein 8 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 6 74
No external refs found!