GSVIVT01037944001


Description : Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037944001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00076010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
AMTR_s00022p00127120 CRR22,... Pentatricopeptide repeat-containing protein At3g09040,... 0.02 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G02980 OTP85 Pentatricopeptide repeat (PPR) superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g002256 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g005795 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g015939 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g025630 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034292 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g034312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g040548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066849 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067906 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069206 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082441 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082577 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g082818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g098198 SLO1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g101155 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13233 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g07484 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54957 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g55172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene02341.t1 Aspi01Gene02341 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene04397.t1 Aspi01Gene04397 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene14355.t1 Aspi01Gene14355 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene22967.t1 Aspi01Gene22967 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene34799.t1 Aspi01Gene34799 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene45825.t1 Aspi01Gene45825 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61363.t1 Aspi01Gene61363 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene70449.t1 Aspi01Gene70449 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene70770.t1 Aspi01Gene70770 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0059.g034605 No alias ssDNA-binding protein *(OSB) & original description: CDS=21-2777 0.03 OrthoFinder output from all 47 species
Cba_g07698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13534 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g30018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.10G062000.1 Ceric.10G062000 ssDNA-binding protein *(OSB) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.27G011400.1 Ceric.27G011400 not classified & original description: pacid=50605728... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000851.30 No alias Pentatricopeptide repeat-containing protein At5g61990,... 0.01 OrthoFinder output from all 47 species
Dcu_g07762 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08560 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g08804 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16553 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g17298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26818 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g39841 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g40896 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g45930 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g45932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g47764 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g04390.1 LOC_Os03g04390 Pentatricopeptide repeat-containing protein At4g35130,... 0.04 OrthoFinder output from all 47 species
LOC_Os05g49920.1 VAC1, ECB2,... RNA editing factor (ECB2/VAC1) 0.03 OrthoFinder output from all 47 species
Len_g03849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g05347 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17570 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23994 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g26583 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g28725 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g33776 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g43451 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
MA_10429043g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.04 OrthoFinder output from all 47 species
MA_106123g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_107356g0010 CRR2 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_110266g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_112594g0010 OTP84 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_114722g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
MA_11765g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
MA_119519g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_122546g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_122606g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 OrthoFinder output from all 47 species
MA_138190g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_14381g0010 EMB2758 Pentatricopeptide repeat-containing protein At3g12770... 0.07 OrthoFinder output from all 47 species
MA_14938g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
MA_1673g0010 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 OrthoFinder output from all 47 species
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_183278g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.03 OrthoFinder output from all 47 species
MA_20585g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
MA_22485g0010 CRR2 Pentatricopeptide repeat-containing protein At3g46790,... 0.02 OrthoFinder output from all 47 species
MA_2473g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
MA_25584g0010 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.02 OrthoFinder output from all 47 species
MA_3449g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 OrthoFinder output from all 47 species
MA_408185g0010 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 OrthoFinder output from all 47 species
MA_412g0010 REME1 Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 OrthoFinder output from all 47 species
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
MA_68707g0010 No alias RNA editing factor (MEF1) 0.02 OrthoFinder output from all 47 species
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 OrthoFinder output from all 47 species
MA_7691g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 OrthoFinder output from all 47 species
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 OrthoFinder output from all 47 species
MA_812716g0010 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_81436g0010 OTP84 Pentatricopeptide repeat-containing protein At4g21300... 0.02 OrthoFinder output from all 47 species
MA_86894g0010 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.02 OrthoFinder output from all 47 species
Msp_g03905 REME1 not classified & original description: none 0.12 OrthoFinder output from all 47 species
Msp_g17470 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43041 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013917 No alias not classified & original description: CDS=1-2493 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0128.g021895 No alias not classified & original description: CDS=196-3294 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0244.g026675 No alias not classified & original description: CDS=1-1575 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0252.g026781 No alias not classified & original description: CDS=1-2700 0.01 OrthoFinder output from all 47 species
Sam_g10477 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39953 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g46568 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g007850.2.1 Solyc01g007850 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Tin_g15629 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000301_P001 Zm00001e000301 Pentatricopeptide repeat-containing protein At4g35130,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 439 469
IPR002885 Pentatricopeptide_repeat 408 434
IPR002885 Pentatricopeptide_repeat 375 402
IPR002885 Pentatricopeptide_repeat 345 370
IPR002885 Pentatricopeptide_repeat 167 212
IPR002885 Pentatricopeptide_repeat 270 317
No external refs found!