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  5. GSVIVT01037972001

GSVIVT01037972001 (ATVPS54, VPS54)


Aliases : ATVPS54, VPS54

Description : Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS54 GARP-specific component


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01037972001

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00168660 ATVPS54, VPS54,... Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
AT4G19490 ATVPS54, VPS54 VPS54 0.03 OrthoFinder output from all 47 species
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Als_g05127 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Aspi01Gene49548.t1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Ceric.15G033300.1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.25 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre02.g087551 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Mp5g09490.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Msp_g23962 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Nbi_g16046 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Ore_g15136 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Sam_g10508 No alias GARP-specific component *(VPS54) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 645 775
No external refs found!