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  5. GSVIVT01038711001

GSVIVT01038711001 (ATO)


Aliases : ATO

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A3 component


Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GSVIVT01038711001

Target Alias Description ECC score Gene Family Method Actions
Aob_g07243 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g02487 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
LOC_Os03g50850.1 ATO, LOC_Os03g50850 component SF3A3 of splicing factor 3A complex 0.05 OrthoFinder output from all 47 species
MA_10435481g0010 ATO component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species
Mp4g20400.1 ATO component SF3A3 of splicing factor 3A complex 0.02 OrthoFinder output from all 47 species
Msp_g11580 ATO component *(SF3A3) of splicing factor 3A complex &... 0.03 OrthoFinder output from all 47 species
Pnu_g07362 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Smo169846 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc03g083430.3.1 ATO, Solyc03g083430 component SF3A3 of splicing factor 3A complex 0.04 OrthoFinder output from all 47 species
Zm00001e020148_P003 ATO, Zm00001e020148 component SF3A3 of splicing factor 3A complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005488 binding IEP HCCA
InterPro domains Description Start Stop
IPR021966 SF3a60_bindingd 81 105
IPR031774 SF3A3_dom 127 206
IPR024598 SF3a60/Prp9_C 331 508
No external refs found!