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  5. Cre01.g020950

Cre01.g020950


Description : Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana


Gene families : OG0004436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g020950
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00122560 evm_27.TU.AmTr_v1... Ribosome biogenesis regulatory protein homolog... 0.06 OrthoFinder output from all 47 species
AT2G37990 No alias ribosome biogenesis regulatory protein (RRS1) family protein 0.05 OrthoFinder output from all 47 species
Aspi01Gene48009.t1 Aspi01Gene48009 component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0570.g077851 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.12G016900.1 Ceric.12G016900 component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.05 OrthoFinder output from all 47 species
Ehy_g11543 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01027072001 No alias Ribosome biogenesis regulatory protein homolog... 0.17 OrthoFinder output from all 47 species
Gb_41748 No alias component ARRS1 of ARPF2-ARRS1 complex 0.03 OrthoFinder output from all 47 species
LOC_Os04g58830.1 LOC_Os04g58830 component ARRS1 of ARPF2-ARRS1 complex 0.14 OrthoFinder output from all 47 species
Mp1g07840.1 No alias component ARRS1 of ARPF2-ARRS1 complex 0.25 OrthoFinder output from all 47 species
Nbi_g06949 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Pir_g56752 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.01 OrthoFinder output from all 47 species
Pp3c3_32550V3.1 Pp3c3_32550 ribosome biogenesis regulatory protein (RRS1) family protein 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004878 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g29092 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g07664 No alias component *(ARRS1) of ARPF2-ARRS1 complex & original... 0.04 OrthoFinder output from all 47 species
Zm00001e016688_P001 Zm00001e016688 component ARRS1 of ARPF2-ARRS1 complex 0.06 OrthoFinder output from all 47 species
Zm00001e025915_P002 Zm00001e025915 component ARRS1 of ARPF2-ARRS1 complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007023 Ribosom_reg 27 186
No external refs found!