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  5. Cre01.g025950

Cre01.g025950


Description : Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g025950
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00121750 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
Adi_g007879 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g21991 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g25481 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g26069 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g34269 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g35628 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g39532 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g32436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g09923 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g27232 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g27846 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g37337 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g37587 OTP86 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene00921.t1 CRR2, Aspi01Gene00921 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene18986.t1 MEF21, Aspi01Gene18986 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene52005.t1 Aspi01Gene52005 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0008.g011300 No alias not classified & original description: CDS=1-2337 0.01 OrthoFinder output from all 47 species
Cba_g19568 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g20476 MEF22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g29658 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.12G084700.1 Ceric.12G084700 not classified & original description: pacid=50602071... 0.02 OrthoFinder output from all 47 species
Ceric.17G033700.1 VAC1, ECB2,... not classified & original description: pacid=50617387... 0.01 OrthoFinder output from all 47 species
Ceric.36G001100.1 Ceric.36G001100 not classified & original description: pacid=50568746... 0.02 OrthoFinder output from all 47 species
Dcu_g06431 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08450 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08531 OTP84 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08893 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g26802 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g35844 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g44643 No alias ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g48863 CRR2 ssDNA-binding protein *(OSB) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g03365 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g12385 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g13082 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g15862 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16425 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22173 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23845 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g30825 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g37952 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g15835 CRR2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01031849001 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.01 OrthoFinder output from all 47 species
GSVIVT01033863001 No alias RNA processing.organelle machineries.RNA... 0.01 OrthoFinder output from all 47 species
GSVIVT01035618001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.01 OrthoFinder output from all 47 species
LOC_Os09g34870.1 LOC_Os09g34870 Pentatricopeptide repeat-containing protein At2g36980,... 0.01 OrthoFinder output from all 47 species
Len_g03710 REME1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g05167 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g12996 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g18535 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g18801 EMB2758 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g33724 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g44704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g44791 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g12945 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g23050 OTP85 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g26678 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g33302 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_20782g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.01 OrthoFinder output from all 47 species
Msp_g05129 VAC1, ECB2, ATECB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g40823 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g41114 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g05844 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g15427 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g16742 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g19073 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g25357 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g35308 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g03427 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g38691 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g63644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04545 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12889 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g14861 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g15474 OTP82 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20514 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g32536 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05115 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g15294 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g59278 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004138 No alias not classified & original description: CDS=1-2646 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0129.g021932 No alias not classified & original description: CDS=1-3567 0.01 OrthoFinder output from all 47 species
Tin_g21292 CRR22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g25660 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g44042 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e019482_P001 Zm00001e019482 Pentatricopeptide repeat-containing protein At5g48910... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 604 630
IPR002885 Pentatricopeptide_repeat 494 538
No external refs found!