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  5. Cre01.g068377

Cre01.g068377 (EMB2762)


Aliases : EMB2762

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOC4 assembly factor


Gene families : OG0004927 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre01.g068377
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00141100 EMB2762,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder output from all 47 species
AT2G17250 EMB2762 CCAAT-binding factor 0.05 OrthoFinder output from all 47 species
Aev_g08693 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.01 OrthoFinder output from all 47 species
Ala_g02072 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Aop_g14342 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0079.g038429 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Ceric.14G034900.1 EMB2762, Ceric.14G034900 SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000553.49 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
Dac_g18421 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g03035 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.06 OrthoFinder output from all 47 species
Dde_g25462 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.01 OrthoFinder output from all 47 species
GSVIVT01004114001 EMB2762 No description available 0.02 OrthoFinder output from all 47 species
LOC_Os04g49580.1 EMB2762, LOC_Os04g49580 SSU processome assembly factor (NOC4) 0.09 OrthoFinder output from all 47 species
Lfl_g06636 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
MA_10433722g0010 EMB2762 SSU processome assembly factor (NOC4) 0.03 OrthoFinder output from all 47 species
MA_9224196g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp1g06620.1 EMB2762 SSU processome assembly factor (NOC4) 0.18 OrthoFinder output from all 47 species
Ore_g27976 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011083 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49646 No alias SSU processome assembly factor *(NOC4) & original... 0.03 OrthoFinder output from all 47 species
Smo446968 EMB2762 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Solyc10g074560.2.1 EMB2762, Solyc10g074560 SSU processome assembly factor (NOC4) 0.1 OrthoFinder output from all 47 species
Spa_g04301 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.01 OrthoFinder output from all 47 species
Tin_g19274 EMB2762 SSU processome assembly factor *(NOC4) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e041386_P001 EMB2762, Zm00001e041386 SSU processome assembly factor (NOC4) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005612 CCAAT-binding_factor 426 592
No external refs found!