Cre02.g079300 (VPS4, SKD1, ATSKD1)

Aliases : VPS4, SKD1, ATSKD1

Description : Vesicle trafficking.endomembrane trafficking.ESCRT (Endosomal Sorting Complex Required for Transport) complexes.VPS4-VTA1 ESCRT-disassembly complex.VPS4/SKD1 ATPase component

Gene families : OG0002846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002846_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre02.g079300

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00168p00030500	VPS4, SKD1,...	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.02	OrthoFinder output from all 47 species
Adi_g086764	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Adi_g114328	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Aev_g03883	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Als_g11054	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Aop_g01291	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Azfi_s0001.g000398	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Cba_g06750	VPS4, SKD1, ATSKD1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g13166	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Ceric.04G022900.1	VPS4, SKD1,...	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001126.11	VPS4, SKD1, ATSKD1	Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1...	0.05	OrthoFinder output from all 47 species
Dcu_g14391	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Dcu_g14392	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Dde_g02152	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Ehy_g09884	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01011251001	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.01	OrthoFinder output from all 47 species
GSVIVT01036166001	VPS4, SKD1, ATSKD1	Vesicle trafficking.endomembrane trafficking.ESCRT...	0.02	OrthoFinder output from all 47 species
LOC_Os01g04814.1	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.02	OrthoFinder output from all 47 species
Lfl_g27517	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Mp8g01610.1	VPS4, SKD1, ATSKD1	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.03	OrthoFinder output from all 47 species
Msp_g05076	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Msp_g11706	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Nbi_g04244	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Pir_g01619	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Sam_g37514	No alias	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Solyc11g007170.2.1	VPS4, SKD1,...	serine carboxypeptidase. ATPase component VPS4/SKD1 of...	0.02	OrthoFinder output from all 47 species
Spa_g11001	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.03	OrthoFinder output from all 47 species
Spa_g25791	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.02	OrthoFinder output from all 47 species
Spa_g49327	VPS4, SKD1, ATSKD1	EC_3.6 hydrolase acting on acid anhydride & original...	0.01	OrthoFinder output from all 47 species
Zm00001e016954_P004	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.04	OrthoFinder output from all 47 species
Zm00001e025779_P001	VPS4, SKD1,...	ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000813	ESCRT I complex	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016197	endosomal transport	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0071985	multivesicular body sorting pathway	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR015415	Vps4_C	368	432
IPR003959	ATPase_AAA_core	165	294
IPR007330	MIT_dom	9	72

External Links

No external refs found!

Cre02.g079300 (VPS4, SKD1, ATSKD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation