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  5. Cre02.g079400

Cre02.g079400


No description available


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g079400
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00103290 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 2, mitochondrial... 0.02 OrthoFinder output from all 47 species
AMTR_s00030p00198740 CCR2, ATGRP7,... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00043p00170970 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
AT3G46020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g006714 GR-RBP3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g043489 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g085301 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g108265 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11662 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g35268 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g44798 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g62580 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g00975 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g49316 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04854.t1 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15568.t1 ATRZ-1A, Aspi01Gene15568 RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19057.t1 Aspi01Gene19057 RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065814 GR-RBP3 not classified & original description: CDS=194-694 0.03 OrthoFinder output from all 47 species
Cba_g04821 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g09636 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g54131 No alias component *(Bud13) of non-snRNP MOS4-associated complex... 0.02 OrthoFinder output from all 47 species
Ceric.06G037800.1 GR-RBP4, GRP4,... not classified & original description: pacid=50619932... 0.02 OrthoFinder output from all 47 species
Ceric.30G070400.1 CCR2, ATGRP7,... not classified & original description: pacid=50608368... 0.02 OrthoFinder output from all 47 species
Dde_g24810 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01036082001 No alias Small RNA-binding protein 11, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_37118 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
LOC_Os12g43600.1 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.01 OrthoFinder output from all 47 species
Len_g02563 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g30812 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g48912 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g00072 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g06624 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g24962 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g07233 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07983 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g12375 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c4_6610V3.1 GRP2, ATGRP2,... glycine-rich RNA-binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g21521 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g33002 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g35314 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc05g053780.4.1 GRP2, ATGRP2,... RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
Solyc10g081180.2.1 GR-RBP3, Solyc10g081180 RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Solyc10g083240.2.1 Solyc10g083240 Small RNA-binding protein 11, chloroplastic... 0.02 OrthoFinder output from all 47 species
Tin_g27808 GR-RBP4, GRP4 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g30660 GR-RBP3 RNA ediTing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g42886 GRP2, ATGRP2, GR-RBP2 RNA ediTing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012278_P001 Zm00001e012278 RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e040294_P001 Zm00001e040294 RNA editing factor (ORRM) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 50 118
No external refs found!