Cre02.g084800 (BIN5, RHL2)

Aliases : BIN5, RHL2

Description : DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana

Gene families : OG0001338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001338_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre02.g084800

Target	Alias	Description	ECC score	Gene Family Method
AT3G13170	ATSPO11-1	Spo11/DNA topoisomerase VI, subunit A protein	0.02	OrthoFinder output from all 47 species
Als_g07187	BIN5, RHL2	component *(TOP6A) of somatic DNA topoisomerase VI...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020902.41	BIN5, RHL2	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
LOC_Os03g54091.1	ATSPO11-1, LOC_Os03g54091	component a (SPO11) of meiotic topoisomerase-VI complex	0.02	OrthoFinder output from all 47 species
LOC_Os08g06050.1	SPO11-2, LOC_Os08g06050	component a (SPO11) of meiotic topoisomerase-VI complex	0.02	OrthoFinder output from all 47 species
Mp4g06530.1	BIN5, RHL2	DNA topoisomerase 6 subunit A OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e012029_P003	ATSPO11-1, Zm00001e012029	component a (SPO11) of meiotic topoisomerase-VI complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
CC	GO:0000940	outer kinetochore	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007059	chromosome segregation	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0010824	regulation of centrosome duplication	IEP	HCCA
BP	GO:0010826	negative regulation of centrosome duplication	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0030030	cell projection organization	IEP	HCCA
BP	GO:0030031	cell projection assembly	IEP	HCCA
BP	GO:0032886	regulation of microtubule-based process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
CC	GO:0036038	MKS complex	IEP	HCCA
BP	GO:0044782	cilium organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0046605	regulation of centrosome cycle	IEP	HCCA
BP	GO:0046606	negative regulation of centrosome cycle	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0060271	cilium assembly	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
BP	GO:0120031	plasma membrane bounded cell projection assembly	IEP	HCCA
BP	GO:0120036	plasma membrane bounded cell projection organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013049	Spo11/TopoVI_A_N	127	188

External Links

No external refs found!

Cre02.g084800 (BIN5, RHL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation