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  5. Cre02.g087551

Cre02.g087551 (ATVPS54, VPS54)


Aliases : ATVPS54, VPS54

Description : Vesicle trafficking.target membrane tethering.GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes.VPS54 GARP-specific component


Gene families : OG0004672 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004672_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre02.g087551

Target Alias Description ECC score Gene Family Method Actions
Adi_g063596 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ala_g02680 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Als_g05127 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Aspi01Gene49548.t1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Cba_g16237 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Ceric.15G033300.1 ATVPS54, VPS54,... GARP-specific component *(VPS54) of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.17 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.01 OrthoFinder output from all 47 species
Dcu_g12433 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
GSVIVT01037972001 ATVPS54, VPS54 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.04 OrthoFinder output from all 47 species
Gb_03763 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
LOC_Os04g13470.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Len_g01396 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Lfl_g02410 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
MA_418299g0010 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Mp5g09490.1 ATVPS54, VPS54 GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Msp_g23962 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ore_g15136 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Ppi_g03262 ATVPS54, VPS54 GARP-specific component *(VPS54) of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Sam_g10508 No alias GARP-specific component *(VPS54) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Solyc02g030100.4.1 ATVPS54, VPS54,... Vacuolar protein sorting-associated protein 54,... 0.02 OrthoFinder output from all 47 species
Solyc02g030110.2.1 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.01 OrthoFinder output from all 47 species
Zm00001e008702_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.05 OrthoFinder output from all 47 species
Zm00001e040599_P001 ATVPS54, VPS54,... GARP-specific component VPS54 of GARP/EARP... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
CC GO:0030173 obsolete integral component of Golgi membrane IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
InterPro domains Description Start Stop
IPR012501 Vps54_C 916 1027
IPR019515 VPS54_N 281 403
No external refs found!