Aliases : UPF1, ATUPF1, LBA1
Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
Gene families : OG0001598 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001598_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Als_g15234 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g22322 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.01 | OrthoFinder output from all 47 species | |
| Aop_g14327 | UPF1, ATUPF1, LBA1 | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os07g31340.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.01 | OrthoFinder output from all 47 species | |
| Mp1g01200.1 | UPF1, ATUPF1, LBA1 | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29675 | No alias | Nonsense-Mediated mRNA Decay effector protein *(UPF1) &... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc08g077420.3.1 | UPF1, ATUPF1,... | UPF1 Nonsense-Mediated mRNA Decay effector protein | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0008104 | protein localization | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0015031 | protein transport | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| BP | GO:0017038 | protein import | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0033036 | macromolecule localization | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
| BP | GO:0071702 | organic substance transport | IEP | HCCA |
| BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |
