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  5. Cre06.g280050

Cre06.g280050 (XRN3, AtXRN3)


Aliases : XRN3, AtXRN3

Description : 5-3 exoribonuclease 3 OS=Arabidopsis thaliana


Gene families : OG0000769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g280050
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Aev_g11412 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g15103 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g21055 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g26061 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g11344 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13654 EIN5, AIN1, XRN4, ATXRN4 exoribonuclease *(XRN4) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene15159.t1 XRN3, AtXRN3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene45037.t1 XRN3, AtXRN3,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.176 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Dcu_g45506 XRN3, AtXRN3 exoribonuclease *(XRN4) & original description: none 0.01 OrthoFinder output from all 47 species
Gb_03499 XRN3, AtXRN3 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
LOC_Os03g58060.1 EIN5, AIN1,... EBF-modulating exoribonuclease (EIN5/XRN4).... 0.01 OrthoFinder output from all 47 species
Ore_g19708 XRN3, AtXRN3 exoribonuclease *(RAT1/XRN2) & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
InterPro domains Description Start Stop
IPR004859 Xrn1_N 1 225
No external refs found!