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  5. Cre06.g282000

Cre06.g282000 (ATSS3, SS3)


Aliases : ATSS3, SS3

Description : Carbohydrate metabolism.starch metabolism.synthesis.starch synthase activities.SSIII-type starch synthase


Gene families : OG0000693 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000693_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g282000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00214840 ATSS4, SS4,... Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
AMTR_s00189p00041140 ATSS4, SS4,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AT1G11720 ATSS3, SS3 starch synthase 3 0.04 OrthoFinder output from all 47 species
AT4G18240 ATSS4, SS4, SSIV starch synthase 4 0.02 OrthoFinder output from all 47 species
Adi_g058565 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g086856 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g25563 ATSS4, SS4, SSIV not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g05131 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17843 ATSS4, SS4, SSIV not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g02255 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05284 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02948.t1 ATSS4, SS4,... starch synthase *(SS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene02950.t1 Aspi01Gene02950 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene32633.t1 ATSS3, SS3,... starch synthase *(SS3) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0001.g000667 ATSS4, SS4, SSIV not classified & original description: CDS=177-2066 0.02 OrthoFinder output from all 47 species
Ceric.01G125000.1 ATSS4, SS4,... starch synthase *(SS4) & original description:... 0.01 OrthoFinder output from all 47 species
Ceric.18G020900.1 ATSS3, SS3,... starch synthase *(SS3) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020746.8 ATSS3, SS3 Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
Dac_g08343 ATSS4, SS4, SSIV not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10971 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01991 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g08981 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g14950 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04040 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012723001 ATSS3, SS3 Carbohydrate metabolism.starch... 0.11 OrthoFinder output from all 47 species
Gb_37508 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os04g53310.1 ATSS3, SS3,... starch synthase (SSIII) 0.01 OrthoFinder output from all 47 species
LOC_Os08g09230.1 ATSS3, SS3,... starch synthase (SSIII) 0.01 OrthoFinder output from all 47 species
Len_g49747 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.03 OrthoFinder output from all 47 species
MA_64002g0010 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.03 OrthoFinder output from all 47 species
Mp2g08030.1 ATSS4, SS4, SSIV Probable starch synthase 4, chloroplastic/amyloplastic... 0.01 OrthoFinder output from all 47 species
Nbi_g03185 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16317 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g15347 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g07616 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g39876 ATSS4, SS4, SSIV starch synthase *(SS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g43473 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0224.g026292 ATSS4, SS4, SSIV not classified & original description: CDS=1-2052 0.01 OrthoFinder output from all 47 species
Sam_g12378 No alias starch synthase *(SS3) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29362 No alias starch synthase *(SS4) & original description: none 0.01 OrthoFinder output from all 47 species
Solyc02g080570.3.1 ATSS3, SS3,... starch synthase (SSIII) 0.03 OrthoFinder output from all 47 species
Spa_g10545 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g17570 ATSS3, SS3 starch synthase *(SS3) & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g19219 ATSS4, SS4, SSIV not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26044 ATSS4, SS4, SSIV starch synthase *(SS4) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006886_P001 ATSS3, SS3,... starch synthase (SSIII) 0.06 OrthoFinder output from all 47 species
Zm00001e039962_P001 ATSS3, SS3,... starch synthase (SSIII) 0.02 OrthoFinder output from all 47 species
Zm00001e041682_P002 ATSS3, SS3,... starch synthase (SSIII) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 1048 1165
IPR005085 CBM25 530 622
IPR005085 CBM25 699 785
IPR005085 CBM25 347 435
IPR013534 Starch_synth_cat_dom 797 985
No external refs found!