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  5. Cre06.g292650

Cre06.g292650


No description available


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre06.g292650
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Adi_g097046 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene55047.t1 Aspi01Gene55047 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g34914 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09005 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.01 OrthoFinder output from all 47 species
Ehy_g29630 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01009936001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01024041001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_05690 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_20760 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
LOC_Os02g50840.2 LOC_Os02g50840 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_39143g0020 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp4g16160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g16230.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Nbi_g04481 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Ore_g01750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.01 OrthoFinder output from all 47 species
Ore_g25799 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.01 OrthoFinder output from all 47 species
Ore_g31536 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g13634 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.01 OrthoFinder output from all 47 species
Ppi_g41929 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Sam_g18607 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g29218 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.01 OrthoFinder output from all 47 species
Smo440870 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc12g089320.3.1 Solyc12g089320 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g09113 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Zm00001e002441_P003 Zm00001e002441 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e037792_P001 Zm00001e037792 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e037793_P001 Zm00001e037793 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 408 454
No external refs found!