Aliases : ATO
Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3A complex.SF3A3 component
Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre06.g297750 | |
| Cluster | HCCA: Cluster_12 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00021p00248250 | ATO,... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01809 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g07359 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0008.g011344 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.01 | OrthoFinder output from all 47 species | |
| Cba_g07603 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.22G050500.1 | ATO, Ceric.22G050500 | component *(SF3A3) of splicing factor 3A complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000912.17 | ATO | RNA processing.RNA splicing.U2-type-intron-specific... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g10840 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g50850.1 | ATO, LOC_Os03g50850 | component SF3A3 of splicing factor 3A complex | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g03055 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10435481g0010 | ATO | component SF3A3 of splicing factor 3A complex | 0.02 | OrthoFinder output from all 47 species | |
| Mp4g20400.1 | ATO | component SF3A3 of splicing factor 3A complex | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g07362 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g14896 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0150.g023308 | ATO | component *(SF3A3) of splicing factor 3A complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g083430.3.1 | ATO, Solyc03g083430 | component SF3A3 of splicing factor 3A complex | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e020148_P003 | ATO, Zm00001e020148 | component SF3A3 of splicing factor 3A complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004379 | glycylpeptide N-tetradecanoyltransferase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| MF | GO:0019107 | myristoyltransferase activity | IEP | HCCA |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
| BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| No external refs found! |
