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  5. Cre07.g330300

Cre07.g330300


Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g330300

Target Alias Description ECC score Gene Family Method Actions
AT1G58470 RBP1, ATRBP1 RNA-binding protein 1 0.01 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
AT4G14300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
AT5G55550 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g008733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g013859 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g022493 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g064547 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088264 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g100512 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g113619 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g05367 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g08655 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g46489 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene54967.t1 Aspi01Gene54967 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0245.g059948 No alias not classified & original description: CDS=716-2137 0.01 OrthoFinder output from all 47 species
Azfi_s0288.g063213 No alias not classified & original description: CDS=60-1199 0.01 OrthoFinder output from all 47 species
Azfi_s0390.g067677 No alias not classified & original description: CDS=363-1799 0.02 OrthoFinder output from all 47 species
Cba_g09693 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001130.27 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g01661 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g02282 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g16527 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
LOC_Os08g23120.1 LOC_Os08g23120 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os08g38410.1 LOC_Os08g38410 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Len_g19867 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MpVg00970.1 No alias No annotation 0.01 OrthoFinder output from all 47 species
Msp_g21023 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g02226 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g07522 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g25069 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g55374 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g20248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g25221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000411 No alias not classified & original description: CDS=1-1413 0.01 OrthoFinder output from all 47 species
Sam_g15340 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Solyc04g014820.4.1 Solyc04g014820 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc12g014600.2.1 Solyc12g014600 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e002844_P001 Zm00001e002844 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e032753_P002 Zm00001e032753 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 109 166
IPR000504 RRM_dom 15 75
No external refs found!