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  5. Cre07.g345900

Cre07.g345900 (DCL1, CAF, EMB76,...)


Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

No description available


Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre07.g345900

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00015000 DCL1, CAF,... RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.04 OrthoFinder output from all 47 species
AT5G20320 DCL4, ATDCL4 dicer-like 4 0.03 OrthoFinder output from all 47 species
Aop_g06264 DCL1, CAF,... endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
Azfi_s0014.g013625 DCL4, ATDCL4 not classified & original description: CDS=9-5069 0.02 OrthoFinder output from all 47 species
Ceric.01G108700.1 DCL4, ATDCL4,... endoribonuclease (DCL4) of transacting siRNA pathway &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.30 DCL1, CAF,... No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01001045001 DCL4, ATDCL4 RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator... 0.03 OrthoFinder output from all 47 species
GSVIVT01035494001 ATDCL3, DCL3 RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease 0.03 OrthoFinder output from all 47 species
Len_g35714 DCL1, CAF,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10437243g0010 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.03 OrthoFinder output from all 47 species
MA_10437243g0020 DCL1, CAF,... Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_108060g0010 DCL1, CAF,... Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
Zm00001e000158_P001 DCL1, CAF,... endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.04 OrthoFinder output from all 47 species
Zm00001e018890_P004 ATDCL3, DCL3,... endoribonuclease (DCL3) 0.02 OrthoFinder output from all 47 species
Zm00001e041209_P001 DCL4, ATDCL4,... endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005034 Dicer_dimerisation_dom 1459 1550
IPR001650 Helicase_C 1229 1286
IPR000999 RNase_III_dom 2935 3101
IPR000999 RNase_III_dom 3833 4041
No external refs found!