Cre09.g405200

Description : Protein biosynthesis.organelle translation machineries.mitochondrial ribosome.large subunit proteome.mtRPL13 component

Gene families : OG0007032 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007032_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre09.g405200
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AT3G01790	No alias	Ribosomal protein L13 family protein	0.02	OrthoFinder output from all 47 species
Adi_g002280	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Ala_g05606	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Als_g02209	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Aspi01Gene27930.t1	Aspi01Gene27930	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0419.g069100	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Cba_g08969	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.02	OrthoFinder output from all 47 species
Ceric.31G057100.1	Ceric.31G057100	component *(uL13m) of large mitoribosomal-subunit...	0.05	OrthoFinder output from all 47 species
Dcu_g39041	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Nbi_g08569	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.01	OrthoFinder output from all 47 species
Solyc09g092090.4.1	Solyc09g092090	component mtRPL13 of large ribosomal subunit proteome	0.02	OrthoFinder output from all 47 species
Spa_g10349	No alias	component *(uL13m) of large mitoribosomal-subunit...	0.03	OrthoFinder output from all 47 species
Zm00001e018964_P002	Zm00001e018964	component mtRPL13 of large ribosomal subunit proteome	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005822	Ribosomal_L13	25	142

External Links

No external refs found!

Cre09.g405200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation