1. Home
  2. Species
  3. Chlamydomonas reinhardtii
  4. Sequence
  5. Cre09.g408200

Cre09.g408200 (At-RSZ22a, RSZ22a)


Aliases : At-RSZ22a, RSZ22a

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP factors.RSZ21/22 splicing factor


Gene families : OG0001173 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001173_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre09.g408200

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00154210 At-RSZ22a,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
AMTR_s00088p00022360 RSZ21, At-RSZ21,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
AT1G23860 RSZ21, At-RSZ21,... RS-containing zinc finger protein 21 0.06 OrthoFinder output from all 47 species
AT2G24590 At-RSZ22a, RSZ22a RNA recognition motif and CCHC-type zinc finger domains... 0.04 OrthoFinder output from all 47 species
AT4G31580 RSZ22, At-RSZ22,... serine/arginine-rich 22 0.11 OrthoFinder output from all 47 species
Adi_g019585 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g020430 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g13431 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g62369 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03230 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g08242 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G091500.1 At-RSZ22a,... RNA splicing factor *(RSZ21/22) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.39G002300.1 At-RSZ22a,... RNA splicing factor *(RSZ21/22) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g32477 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g37944 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g00843 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g41811 At-RSZ22a, RSZ22a not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g15858 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01020220001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
GSVIVT01033172001 At-RSZ22a, RSZ22a RNA processing.RNA splicing.spliceosome-associated... 0.07 OrthoFinder output from all 47 species
Gb_16463 At-RSZ22a, RSZ22a RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Gb_20020 RSZ21, At-RSZ21,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Len_g19035 At-RSZ22a, RSZ22a not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19889 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435943g0010 At-RSZ22a, RSZ22a RSZ21/22 RNA splicing factor 0.08 OrthoFinder output from all 47 species
Msp_g31028 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g18145 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g13208 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g17168 No alias RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g069120.4.1 At-RSZ22a,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g01672 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51937 At-RSZ22a, RSZ22a not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g22621 At-RSZ22a, RSZ22a RNA splicing factor *(RSZ21/22) & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e015077_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Zm00001e016090_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.11 OrthoFinder output from all 47 species
Zm00001e022939_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.05 OrthoFinder output from all 47 species
Zm00001e023726_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.07 OrthoFinder output from all 47 species
Zm00001e036288_P001 At-RSZ22a,... RSZ21/22 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 5 62
IPR001878 Znf_CCHC 103 118
No external refs found!