Cre10.g429100

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.proline-tRNA ligase

Gene families : OG0001971 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre10.g429100
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT5G52520	OVA6, PRORS1	Class II aaRS and biotin synthetases superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g037804	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g05302	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g07283	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11327	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27363.t1	OVA6, PRORS1,...	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G035100.1	OVA6, PRORS1,...	proline-tRNA ligase & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.34G026500.1	Ceric.34G026500	proline-tRNA ligase & original description:...	0.06	OrthoFinder output from all 47 species
Dde_g00716	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g02853	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02585	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01028250001	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
LOC_Os07g07060.1	OVA6, PRORS1,...	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
LOC_Os12g25710.1	LOC_Os12g25710	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Len_g01828	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g03098	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Mp2g25470.1	No alias	proline-tRNA ligase	0.07	OrthoFinder output from all 47 species
Msp_g03194	No alias	proline-tRNA ligase & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g12513	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g11390	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g01294	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01128	No alias	proline-tRNA ligase & original description: none	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012789	No alias	proline-tRNA ligase & original description: CDS=116-1726	0.02	OrthoFinder output from all 47 species
Sam_g10338	No alias	proline-tRNA ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo74713	No alias	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.02	OrthoFinder output from all 47 species
Smo94171	OVA6, PRORS1	Protein biosynthesis.aminoacyl-tRNA synthetase...	0.03	OrthoFinder output from all 47 species
Solyc01g096870.4.1	OVA6, PRORS1,...	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Solyc06g068320.3.1	Solyc06g068320	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species
Spa_g09904	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26532	OVA6, PRORS1	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15505	No alias	proline-tRNA ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007170_P001	Zm00001e007170	proline-tRNA ligase	0.1	OrthoFinder output from all 47 species
Zm00001e024670_P003	Zm00001e024670	proline-tRNA ligase	0.07	OrthoFinder output from all 47 species
Zm00001e032878_P001	OVA6, PRORS1,...	proline-tRNA ligase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004827	proline-tRNA ligase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006433	prolyl-tRNA aminoacylation	IEA	Interproscan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002314	aa-tRNA-synt_IIb	161	327
IPR016061	Pro-tRNA_ligase_II_C	472	546
IPR004154	Anticodon-bd	346	445

External Links

No external refs found!

Cre10.g429100

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation