Description : DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana
Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre10.g436650 | |
| Cluster | HCCA: Cluster_53 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00045p00149950 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.28G050700.1 | Ceric.28G050700 | not classified & original description: pacid=50570551... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g07014 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01017719001 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os03g01830.1 | LOC_Os03g01830 | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g37545 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Mp8g11020.1 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g33516 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Sam_g16562 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Smo142751 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa... | 0.01 | OrthoFinder output from all 47 species | |
| Smo403724 | No alias | DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Tin_g18850 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0005524 | ATP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006400 | tRNA modification | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0030488 | tRNA methylation | IEP | HCCA |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | HCCA |
| BP | GO:0032259 | methylation | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| CC | GO:0034708 | methyltransferase complex | IEP | HCCA |
| BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | HCCA |
| CC | GO:1990234 | transferase complex | IEP | HCCA |
| No external refs found! |
