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  5. Cre10.g439150

Cre10.g439150 (RPT5A, ATS6A.2)


Aliases : RPT5A, ATS6A.2

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT5 regulatory component


Gene families : OG0003325 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003325_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre10.g439150
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00104360 RPT5A, ATS6A.2,... Protein degradation.26S proteasome.regulatory... 0.05 OrthoFinder output from all 47 species
AT1G09100 RPT5B 26S proteasome AAA-ATPase subunit RPT5B 0.05 OrthoFinder output from all 47 species
AT3G05530 RPT5A, ATS6A.2 regulatory particle triple-A ATPase 5A 0.04 OrthoFinder output from all 47 species
Adi_g008732 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Aop_g07899 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene01493.t1 RPT5B, Aspi01Gene01493 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene28244.t1 RPT5A, ATS6A.2,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010505 RPT5B regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Ceric.14G077800.1 RPT5A, ATS6A.2,... regulatory component *(RPT5) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001187.20 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Oryza... 0.06 OrthoFinder output from all 47 species
Dac_g16496 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Dcu_g01308 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Dde_g12003 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
GSVIVT01031137001 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.02 OrthoFinder output from all 47 species
Gb_01340 RPT5A, ATS6A.2 regulatory component RPT5 of 26S proteasome 0.03 OrthoFinder output from all 47 species
Gb_25628 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Brassica... 0.05 OrthoFinder output from all 47 species
Gb_25630 RPT5A, ATS6A.2 26S proteasome regulatory subunit 6A homolog OS=Solanum... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56000.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.09 OrthoFinder output from all 47 species
LOC_Os06g07630.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.04 OrthoFinder output from all 47 species
Len_g18791 RPT5A, ATS6A.2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g26943 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.02 OrthoFinder output from all 47 species
Mp3g09490.1 RPT5A, ATS6A.2 regulatory component RPT5 of 26S proteasome 0.07 OrthoFinder output from all 47 species
Msp_g05078 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Nbi_g10547 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.04 OrthoFinder output from all 47 species
Pp3c5_21920V3.1 RPT5A, ATS6A.2,... regulatory particle triple-A ATPase 5A 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012431 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.01 OrthoFinder output from all 47 species
Sam_g17237 No alias regulatory component *(RPT5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Smo74992 RPT5A, ATS6A.2 Protein degradation.26S proteasome.regulatory... 0.04 OrthoFinder output from all 47 species
Solyc01g099760.3.1 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.05 OrthoFinder output from all 47 species
Spa_g12836 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.03 OrthoFinder output from all 47 species
Tin_g01827 RPT5A, ATS6A.2 regulatory component *(RPT5) of 26S proteasome &... 0.05 OrthoFinder output from all 47 species
Zm00001e016153_P002 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.11 OrthoFinder output from all 47 species
Zm00001e031055_P001 RPT5A, ATS6A.2,... regulatory component RPT5 of 26S proteasome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 212 344
IPR032501 Prot_ATP_ID_OB_C 78 154
No external refs found!