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  5. Cre11.g467654

Cre11.g467654


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 OS=Arabidopsis thaliana


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre11.g467654

Target Alias Description ECC score Gene Family Method Actions
AT5G13010 EMB3011 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g078789 No alias RNA helicase *(Prp22) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g37436 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01190 EMB3011 RNA helicase *(Prp16) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene28720.t1 Aspi01Gene28720 RNA helicase *(Prp22) & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.34G065000.1 Ceric.34G065000 not classified & original description: pacid=50623415... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021589.28 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.01 OrthoFinder output from all 47 species
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Gb_40354 ESP3, EMB2733 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.01 OrthoFinder output from all 47 species
Len_g09738 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g00856 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.01 OrthoFinder output from all 47 species
Sam_g16823 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.01 OrthoFinder output from all 47 species
Smo76120 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Solyc10g076910.2.1 EMB3011, Solyc10g076910 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Tin_g28400 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 569 643
IPR003593 AAA+_ATPase 138 255
IPR001650 Helicase_C 363 491
No external refs found!