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  5. Cre12.g494450

Cre12.g494450


Description : 30S ribosomal protein S16, chloroplastic OS=Staurastrum punctulatum


Gene families : OG0002911 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002911_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre12.g494450
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT4G34620 SSR16 small subunit ribosomal protein 16 0.04 OrthoFinder output from all 47 species
Adi_g002716 No alias component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Adi_g019302 SSR16 component *(bS16m) of small mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Adi_g074405 SSR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0066.g036077 No alias component *(bS16m) of small mitoribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ceric.13G025200.1 Ceric.13G025200 component *(bS16m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Dcu_g50939 SSR16 component *(bS16m) of small mitoribosomal-subunit... 0.01 OrthoFinder output from all 47 species
Ehy_g05272 SSR16 not classified & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os09g32274.1 LOC_Os09g32274 component mtRPS16 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Len_g04546 No alias component *(bS16m) of small mitoribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Mp4g12130.1 SSR16 component mtRPS16 of small ribosomal subunit proteome 0.26 OrthoFinder output from all 47 species
Nbi_g00253 No alias component *(bS16m) of small mitoribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g00098 SSR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g28852 SSR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04188 No alias component *(bS16m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Ppi_g19261 No alias component *(bS16c) of small plastid ribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008294 No alias component *(bS16m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Sam_g10315 No alias component *(bS16m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Smo7638 No alias Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 43 99
No external refs found!